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comparison test-data/sequence.gb @ 1:593bb8f5488b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
author bgruening
date Wed, 07 Feb 2018 06:22:58 -0500
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0:5db064bbb3be 1:593bb8f5488b
1 LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013
2 DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591
3 A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence.
4 ACCESSION ARBH01000003 ARBH01000000
5 VERSION ARBH01000003.1
6 DBLINK BioProject: PRJNA165347
7 BioSample: SAMN02256403
8 KEYWORDS WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT.
9 SOURCE Amycolatopsis balhimycina FH 1894
10 ORGANISM Amycolatopsis balhimycina FH 1894
11 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
12 Amycolatopsis.
13 REFERENCE 1 (bases 1 to 3500)
14 AUTHORS Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
15 Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
16 Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
17 Hua,S.X. and Woyke,T.
18 TITLE Direct Submission
19 JOURNAL Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
20 Drive, Walnut Creek, CA 94598-1698, USA
21 COMMENT URL -- http://www.jgi.doe.gov
22 JGI Project ID: 404843
23 Source DNA and Organism available from Hans-Peter Klenk
24 (hpk@dsmz.de)
25 Source DNA available from Hans-Peter Klenk (hpk@dsmz.de)
26 Organism available from Hans-Peter Klenk (hpk@dsmz.de)
27 Contacts: Hans-Peter Klenk (hpk@dsmz.de)
28 Tanja Woyke (microbe@cuba.jgi-psf.org)
29 Whole genome sequencing and draft assembly at JGI-PGF
30 Annotation by JGI-ORNL
31 The JGI and collaborators endorse the principles for the
32 distribution and use of large scale sequencing data adopted by the
33 larger genome sequencing community and urge users of this data to
34 follow them. It is our intention to publish the work of this
35 project in a timely fashion and we welcome collaborative
36 interaction on the project and analysis.
37 (http://www.genome.gov/page.cfm?pageID=10506376)
38 Full annotations are available from IMG.
39
40 ##MIGS-Data-START##
41 investigation_type :: bacteria_archaea
42 project_name :: Amycolatopsis balhimycina DSM 44591
43 collection_date :: Missing
44 lat_lon :: Missing
45 depth :: Missing
46 alt_elev :: Missing
47 country :: India
48 num_replicons :: Missing
49 ref_biomaterial :: DSM 44591
50 biotic_relationship :: Free living
51 rel_to_oxygen :: Aerobe
52 isol_growth_condt :: Missing
53 assembly :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap
54 v. 4.24
55 finishing_strategy :: Missing
56 environment :: Soil
57 trophic_level :: Missing
58 sequencing_meth :: WGS
59 GOLD Stamp ID :: Gi10728
60 Type Strain :: Yes
61 Funding Program :: DOE-CSP 2011
62 Isolation Site :: Soil
63 Cell Shape :: Filament-shaped
64 Motility :: Nonmotile
65 Sporulation :: Sporulating
66 Temperature Range :: Mesophile
67 Gram Staining :: Gram+
68 Diseases :: None
69 ##MIGS-Data-END##
70
71 ##Genome-Assembly-Data-START##
72 Finishing Goal :: Improved High-Quality Draft
73 Current Finishing Status :: Improved High-Quality Draft
74 Assembly Method :: Velvet v. 1.1.05; ALLPATHS v. r38445;
75 Phrap v. 4.24
76 Genome Coverage :: Unknown
77 Sequencing Technology :: Illumina GAii
78 ##Genome-Assembly-Data-END##
79 FEATURES Location/Qualifiers
80 source 1..3500
81 /organism="Amycolatopsis balhimycina FH 1894"
82 /mol_type="genomic DNA"
83 /strain="DSM 44591"
84 /culture_collection="DSM:44591"
85 /db_xref="taxon:1089545"
86 ORIGIN
87 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg
88 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg
89 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc
90 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc
91 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga
92 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca
93 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc
94 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg
95 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc
96 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca
97 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc
98 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg
99 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg
100 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg
101 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt
102 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg
103 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc
104 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg
105 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc
106 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc
107 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg
108 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga
109 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg
110 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct
111 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg
112 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg
113 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg
114 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact
115 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc
116 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca
117 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc
118 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg
119 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact
120 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc
121 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga
122 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga
123 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc
124 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg
125 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc
126 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg
127 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga
128 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta
129 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac
130 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc
131 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg
132 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg
133 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg
134 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt
135 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg
136 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg
137 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt
138 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt
139 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc
140 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg
141 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg
142 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg
143 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg
144 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg
145 3481 ctcagggcct gacctaccac
146 //