antismash: test-data/index.html comparison

comparison test-data/index.html @ 4:e78e25d3b4bd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit f5f8e44e726c9f2cc57e0f0fe8182a73afa56669

author	bgruening
date	Tue, 31 May 2022 14:04:07 +0000
parents	5784e268efca
children

comparison

equal deleted inserted replaced

-:5784e268efca
+:e78e25d3b4bd
 <img src="images/bacteria_antismash_logo.svg" alt="antiSMASH logo" style="width:40px;height:unset;">
 </a>
 </div>
 <div>
 <a href="https://antismash.secondarymetabolites.org/">
-antiSMASH version 5.1.2
+antiSMASH version 6.1.1
 </a>
 </div>
 </div>
 <div class="custom-description"></div>
 <div class="ancillary-links">
 <div class="arrow-left" id="prev-region"></div>
 <div class="regbutton" style="min-width: inherit;"><a href="#">Overview</a></div>
 <div style="display: flex; flex-wrap: wrap">
+<div class="regbutton PKS T1PKS r1c1">
-<div class="regbutton T1PKS r1c1">
 <a href="#r1c1">1.1</a>
 </div>
 </div>
 <div class="overview-layout">
 <div id="record-tables">
 <div id="single-record-tables">
 <div class="record-overview-header">
 <strong>ARBH01000003.1</strong>
+<div class="download-container">
+<div class="download-icon-inverse download-svg" data-tag="record-minimap-1" data-filename="ARBH01000003.1_overview.svg">
+</div>
+</div>
 </div>
 <div class="record-overview-details">
 <svg id="record-minimap-1" class="record-overview-svg" height="1" width="1"></svg>
 <table class="region-table">
 <thead>
 <th>Similarity</th>
 </tr>
 </thead>
 <tbody>
 <tr class="linked-row odd" data-anchor="#r1c1">
+<td class="regbutton PKS T1PKS r1c1">
-<td class="regbutton T1PKS r1c1">
 <a href="#r1c1">Region&nbsp1</a>
 </td>
 <td>
 <a class="external-link" href="https://docs.antismash.secondarymetabolites.org/glossary/#t1pks" target="_blank">T1PKS</a>
 <div class ="description-container">
 <div class="heading"> ARBH01000003.1 - Region 1 - T1PKS <div class="help-container"> <div class="help-icon" data-id="region_svg-help-4"></div> <span class="help-tooltip" id="region_svg-help-4">Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.<br>More detailed help is available <a class='external-link' href='https://docs.antismash.secondarymetabolites.org/understanding_output/#the-antismash-5-region-concept' target='_blank'>here</a>.</span></div></div>
 <div class="region-download">
 <a href = ARBH01000003.1.region001.gbk>Download region GenBank file</a>
 </div>
+<div class="region-download">
+<div class="link-like download-svg" data-tag="r1c1-svg" data-filename="ARBH01000003.1_r1c1.svg">Download region SVG</div>
+</div>
 <div class = 'description-text'>
 Location: 1 - 3,500 nt. (total: 3,500 nt)
 <a class="cluster-rules-header" id="r1c1-rules-header" href="#r1c1">Show pHMM detection rules used</a>
 </div>
 <div class="legend-label">TTA codons</div>
 </div>
 </div>
 </div>
 <div class="zoom-buttons">
 <div class="button-like zoom-button zoom-reset"><img src="images/expand-arrows-alt-solid.svg" alt="reset zoom">reset view</div>
 <div class="button-like zoom-button zoom-in"><img src="images/search-solid.svg" alt="zoom">zoom to selection</div>
 NRPS/PKS domains
 </div>
 <div class="body-details-header r1c1-knownclusterblast" data-name="r1c1-knownclusterblast">
 KnownClusterBlast
 </div>
 <div class="body-details-header r1c1-subclusterblast" data-name="r1c1-subclusterblast">
 SubClusterBlast
 </div>
 </div>
 <div class="body-details-section r1c1-nrps_pks">
 <div class="details">
 <div class="heading">
 <span>Detailed domain annotation</span>
 <div class="help-container"> <div class="help-icon" data-id="nrps-domain-help-1"></div> <span class="help-tooltip" id="nrps-domain-help-1">Shows <a href='https://docs.antismash.secondarymetabolites.org/glossary/#nrps' target='_blank'>NRPS</a>- and <a href='https://docs.antismash.secondarymetabolites.org/glossary/#pks' target='_blank'>PKS</a>-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.<br>A glossary is available <a href='https://docs.antismash.secondarymetabolites.org/modules/nrps_pks_domains/' target='_blank'>here</a>.</span></div>
+<div class="download-container">
+<div class="download-icon download-svg" data-tag="r1c1-details-svg" data-filename="ARBH01000003.1_r1c1_nrps_pks.svg">
+</div>
+</div>
 </div>
 <div class="nrps-pks-domain-buttons">
 <div class="domains-selected-only switch-container"><span class="switch-desc">Selected features only</span> <label class="switch">  <input class="domains-selected-only" type="checkbox">  <span class="slider"></span> </label></div>
 <div class="show-module-domains switch-container"><span class="switch-desc">Show module domains</span> <label class="switch">  <input class="show-module-domains" type="checkbox">  <span class="slider"></span> </label></div>
 </div>
 <div class="details-svg" id="r1c1-details-svg"></div>
 </div>
 </div>
 <div class="body-details-section r1c1-knownclusterblast">
 <div class = "knownclusterblast">
 </div>
 </div>
 </div>
 <div class="sidepanel">
 <div class="sidepanel-details-headers">
 <script src="js/jquery.js"></script>
 <script src="js/antismash.js"></script>
 <script src="regions.js"></script>
 <script>
 $(document).ready(function() {
-viewer["start"](all_regions, details_data, recordData);
+viewer["start"](all_regions, details_data, resultsData, recordData);
 })
 </script>
 <svg xmlns="http://www.w3.org/2000/svg" version="1.1" xmlns:xlink="http://www.w3.org/1999/xlink">
 <defs>

Mercurial > repos > bgruening > antismash

comparison test-data/index.html @ 4:e78e25d3b4bd draft