view tool_dependencies.xml @ 0:63f6f42d112b draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 7aa0b566d492b1830c0bd2e54ddf4a26be95f76d

<?xml version="1.0"?>
<tool_dependency>
    <package name="bamhash" version="1.1">
        <install version="1.0">
            <actions>
                <action target_filename="BamHash-dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz"
                    type="download_by_url">https://github.com/DecodeGenetics/BamHash/archive/dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>bamhash_checksum_bam</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>bamhash_checksum_fasta</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>bamhash_checksum_fastq</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PILEOMETH_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
            <readme>
        <![CDATA[
            BamHash: Hash BAM and FASTQ files to verify data integrity
            See https://github.com/DecodeGenetics/BamHash
        ]]>
        </readme>
    </package>
</tool_dependency>