view bigwig_to_bedgraph.xml @ 0:3799012ce2ff draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit b3c2bbc3342107c35a1dee05ccc1e4eddffd8a50-dirty

<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0">
    <description>
        Convert from bigWig to bedGraph format
    </description>
    <requirements>
        <requirement type="package" version="312">ucsc_tools</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
        bigWigToBedGraph "${input}" "${output}"
    ]]></command>
    <inputs>
        <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/>
    </inputs>
    <outputs>
        <data format="bedgraph" name="output" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="bigWigToBedGraph.bw" ftype="bigwig"/>
            <output name="output" file="bigWigToBedGraph_result1.bedgraph" ftype="bedgraph" />
        </test>
        <test><!-- The following crashes on old binaries of bigWigToBedGraph -->
            <param name="input" value="bigWigToBedGraph_test2.bw" ftype="bigwig"/>
            <output name="output" file="bigWigToBedGraph_result2.bedgraph" ftype="bedgraph" />
        </test>
    </tests>
    <help><![CDATA[

**What it does**

Converts bigWig files to bedGraph format.

    ]]></help>
</tool>