# HG changeset patch
# User bgruening
# Date 1761116425 0
# Node ID 0a73ffe34e7d8644e911aa0dfe4e3eae80765087
# Parent  3799012ce2ffadd4e457d1518f391e335c396a55
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit 4eeb2fca815dfe7c173a5937d25f9715621ed66b

diff -r 3799012ce2ff -r 0a73ffe34e7d bigwig_to_bedgraph.xml
--- a/bigwig_to_bedgraph.xml	Tue Sep 22 04:12:40 2015 -0400
+++ b/bigwig_to_bedgraph.xml	Wed Oct 22 07:00:25 2025 +0000
@@ -1,15 +1,12 @@
-<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0">
+<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.1" profile="24.1">
     <description>
         Convert from bigWig to bedGraph format
     </description>
     <requirements>
-        <requirement type="package" version="312">ucsc_tools</requirement>
+        <requirement type="package" version="482">ucsc-bigwigtobedgraph</requirement>
     </requirements>
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
-    <command><![CDATA[
-        bigWigToBedGraph "${input}" "${output}"
+    <command detect_errors="exit_code"><![CDATA[
+        bigWigToBedGraph '${input}' '${output}'
     ]]></command>
     <inputs>
         <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/>
@@ -34,4 +31,7 @@
 Converts bigWig files to bedGraph format.
 
     ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btq351</citation>
+    </citations>
 </tool>
diff -r 3799012ce2ff -r 0a73ffe34e7d tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Sep 22 04:12:40 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="ucsc_tools" version="312">
-        <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>