Mercurial > repos > bgruening > bionano_scaffold
changeset 11:3371c5bdc17a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit f2952aec50c8bf269f95bd3caa634b232e640729
| author | bgruening |
|---|---|
| date | Mon, 27 Feb 2023 14:32:45 +0000 |
| parents | 22286dab5aa1 |
| children | |
| files | bionano_scaffold.xml macros.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/bionano_scaffold.xml Wed Jan 18 15:22:13 2023 +0000 +++ b/bionano_scaffold.xml Mon Feb 27 14:32:45 2023 +0000 @@ -60,8 +60,9 @@ && python '$__tool_directory__/remove_fake_cut_sites.py' $output_file_NCBI 'SCAFFOLD_NCBI_trimmed.fasta' 'output.log' && python '$__tool_directory__/remove_fake_cut_sites.py' $output_file_not_scaffolded 'NOT_SCAFFOLDED_trimmed.fasta' 'output.log' #end if - && echo >> hybrid_scaffolds/*cut.txt - && mv hybrid_scaffolds/*cut.txt hybrid_scaffolds/keys.txt + ## the next lines are required because the XXXX_cut.txt file is not always generated + && touch hybrid_scaffolds/temp_cut.txt + && cat hybrid_scaffolds/*cut.txt > hybrid_scaffolds/keys.txt ]]> </command> <configfiles> <configfile name="vgp_mode"><![CDATA[
--- a/macros.xml Wed Jan 18 15:22:13 2023 +0000 +++ b/macros.xml Mon Feb 27 14:32:45 2023 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">3.7.0</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@BIONANO_SUPPORT_TEXT@"> Bionano Genomics has agreed to provide the licensed Bionano Solve software to enable the VGP to package the software in a container.