Mercurial > repos > bgruening > bismark
comparison bismark_bowtie_wrapper.xml @ 2:82814a8a2395 draft
added samtools 0.1.19 as dependency
| author | bgruening |
|---|---|
| date | Wed, 21 Aug 2013 05:19:54 -0400 |
| parents | 62c6da72dd4a |
| children | 91f07ff056ca |
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| 1:9d02cd7883ad | 2:82814a8a2395 |
|---|---|
| 1 <tool id="bismark_bowtie" name="Bismark" version="0.7.12"> | 1 <tool id="bismark_bowtie" name="Bismark" version="0.7.12.1"> |
| 2 <!-- Wrapper compatible with Bismark version 0.7.11 --> | 2 <!-- Wrapper compatible with Bismark version 0.7.11 --> |
| 3 <description>bisulfite mapper (bowtie)</description> | 3 <description>bisulfite mapper (bowtie)</description> |
| 4 <!--<version_command>bismark version</version_command>--> | 4 <!--<version_command>bismark version</version_command>--> |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="set_environment">SCRIPT_PATH</requirement> | 6 <requirement type="set_environment">SCRIPT_PATH</requirement> |
| 7 <requirement type="package" version="0.1.18">samtools</requirement> | 7 <requirement type="package" version="0.1.19">samtools</requirement> |
| 8 <requirement type="package" version="0.12.8">bowtie</requirement> | 8 <requirement type="package" version="0.12.8">bowtie</requirement> |
| 9 </requirements> | 9 </requirements> |
| 10 <parallelism method="basic"></parallelism> | 10 <parallelism method="basic"></parallelism> |
| 11 <command interpreter="python"> | 11 <command interpreter="python"> |
| 12 bismark_wrapper.py | 12 bismark_wrapper.py |