Mercurial > repos > bgruening > bismark
comparison bismark_wrapper.py @ 2:82814a8a2395 draft
added samtools 0.1.19 as dependency
| author | bgruening |
|---|---|
| date | Wed, 21 Aug 2013 05:19:54 -0400 |
| parents | 62c6da72dd4a |
| children | 91f07ff056ca |
comparison
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| 1:9d02cd7883ad | 2:82814a8a2395 |
|---|---|
| 283 break | 283 break |
| 284 except OverflowError: | 284 except OverflowError: |
| 285 pass | 285 pass |
| 286 | 286 |
| 287 raise Exception, stderr | 287 raise Exception, stderr |
| 288 | |
| 289 tmp_stdout.close() | 288 tmp_stdout.close() |
| 290 tmp_stderr.close() | 289 tmp_stderr.close() |
| 291 | 290 |
| 292 # TODO: look for errors in program output. | 291 # TODO: look for errors in program output. |
| 293 except Exception, e: | 292 except Exception, e: |