Mercurial > repos > bgruening > bismark
comparison bismark_methylation_extractor.xml @ 13:f211753166bd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit b9780e368b2e46dc541a846519ccc9593226ee0d
author | bgruening |
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date | Tue, 30 Jul 2019 06:30:36 -0400 |
parents | 78c791a11b4c |
children | 8c191acde702 |
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12:78c791a11b4c | 13:f211753166bd |
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1 <tool id="bismark_methylation_extractor" name="Bismark Meth. Extractor" version="0.20.0" profile="18.01"> | 1 <tool id="bismark_methylation_extractor" name="Bismark Meth. Extractor" version="0.22.1" profile="18.01"> |
2 <description>Reports on methylation status of reads mapped by Bismark</description> | 2 <description>Reports on methylation status of reads mapped by Bismark</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.20.0">bismark</requirement> | 4 <requirement type="package" version="0.22.1">bismark</requirement> |
5 <requirement type="package" version="1.8">samtools</requirement> | 5 <requirement type="package" version="1.8">samtools</requirement> |
6 <requirement type="package" version="2.3.4.2">bowtie2</requirement> | 6 <requirement type="package" version="2.3.5">bowtie2</requirement> |
7 </requirements> | 7 </requirements> |
8 <command><![CDATA[ | 8 <command><![CDATA[ |
9 python '$__tool_directory__/bismark_methylation_extractor.py' | 9 python '$__tool_directory__/bismark_methylation_extractor.py' |
10 | 10 |
11 --multicore "\${GALAXY_SLOTS:-4}" | 11 --multicore "\${GALAXY_SLOTS:-4}" |