Mercurial > repos > bgruening > bismark

comparison test-data/mapping_report.txt @ 13:f211753166bd draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit b9780e368b2e46dc541a846519ccc9593226ee0d
author bgruening
date Tue, 30 Jul 2019 06:30:36 -0400
parents 9bfe38410155
children
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12:78c791a11b4c 13:f211753166bd
1 Bismark report for: /private/var/folders/cf/k7c5rjhj1sggk6x8z1jnw4b80000gp/T/tmpywNSSM/files/000/dataset_2.dat (version: v0.20.0) 1 Bismark report for: input_1.fq.gz (version: v0.22.1)
2 Option '--directional' specified (default mode): alignments to complementary strands (CTOT, CTOB) were ignored (i.e. not performed) 2 Option '--directional' specified (default mode): alignments to complementary strands (CTOT, CTOB) were ignored (i.e. not performed)
3 Bismark was run with Bowtie 2 against the bisulfite genome of /private/var/folders/cf/k7c5rjhj1sggk6x8z1jnw4b80000gp/T/tmp4_4hiluf/ with the specified options: -q -L 20 -D 15 -R 2 --score-min L,0,-0.2 --ignore-quals --quiet 3 Bismark was run with Bowtie 2 against the bisulfite genome of /tmp/tmpProAS5/ with the specified options: -q -L 20 -D 15 -R 2 --score-min L,0,-0.2 --ignore-quals --quiet
4 4
5 Final Alignment report 5 Final Alignment report
6 ====================== 6 ======================
7 Sequences analysed in total: 44115 7 Sequences analysed in total: 44115
8 Number of alignments with a unique best hit from the different alignments: 554 8 Number of alignments with a unique best hit from the different alignments: 554