diff bismark_bowtie2_wrapper.xml @ 10:7bffcb6fc81d draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 23685f742f0b5cd5de871c285d247d560485b11b

--- a/bismark_bowtie2_wrapper.xml	Fri Feb 22 14:15:46 2019 -0500
+++ b/bismark_bowtie2_wrapper.xml	Tue Feb 26 18:42:28 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0.1" profile="18.01">
+<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0.2" profile="18.01">
     <description>Bisulfite reads mapper</description>
     <requirements>
         <requirement type="package" version="0.20.0">bismark</requirement>
@@ -252,7 +252,8 @@
                        label="Write the bismark output and summary information to an extra file"/>
                 <param name="isReportOutput" type="boolean" truevalue="true" falsevalue="false" checked="true"
                        label="Offer all report files concatenated in one file (Mapping Report)"/>
-                <param argument="--non_directional" type="boolean" truevalue="--non_directional" falsevalue="" checked="false"
+                <param argument="--non-directional" name="non_directional" type="boolean"
+                       truevalue="--non-directional" falsevalue="" checked="false" 
                        label="The sequencing library was constructed in a non strand-specific manner, alignments to all four bisulfite strands will be reported."/>
 
                 <!--end output options -->