Mercurial > repos > bgruening > bismark
diff test-data/output_html_report.html @ 13:f211753166bd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit b9780e368b2e46dc541a846519ccc9593226ee0d
| author | bgruening |
|---|---|
| date | Tue, 30 Jul 2019 06:30:36 -0400 |
| parents | 9bfe38410155 |
| children |
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--- a/test-data/output_html_report.html Wed Jun 05 07:44:26 2019 -0400 +++ b/test-data/output_html_report.html Tue Jul 30 06:30:36 2019 -0400 @@ -4,7 +4,7 @@ <head> <meta http-equiv="content-type" content="text/html; charset=UTF-8"> - <title>Bismark Processing Report - /private/var/folders/cf/k7c5rjhj1sggk6x8z1jnw4b80000gp/T/tmpDiq_J8/files/000/dataset_2.dat</title> + <title>Bismark Processing Report - input_1.fq.gz</title> <style> body { @@ -148,8 +148,8 @@ <h1>Bismark Processing Report</h1> <div class="subtitle"> - <h3>/private/var/folders/cf/k7c5rjhj1sggk6x8z1jnw4b80000gp/T/tmpDiq_J8/files/000/dataset_2.dat</h3> - <p>Data processed at 14:27 on 2018-08-21</p> + <h3>input_1.fq.gz</h3> + <p>Data processed at 10:50 on 2019-07-30</p> </div> </div> @@ -923,13 +923,27 @@ }, }; - Plotly.newPlot('mbias1_plot', data, layout,{displaylogo: false}, {modeBarButtonsToRemove: ['toImage', - 'sendDataToCloud', - 'resetScale2d', - 'hoverClosestCartesian', - 'hoverCompareCartesian', - 'toggleZoom', - 'toggleSpikelines']}); + var options = { + displaylogo: false, + modeBarButtonsToRemove: + ['zoom2d', + 'sendDataToCloud', + 'pan', + 'pan2d', + 'resetScale2d', + 'hoverClosestCartesian', + 'hoverCompareCartesian', + 'toggleSpikelines'] + , + toImageButtonOptions: { + filename: 'Bismark M-bias Read 1', + width: 1600, + height: 600, + format: 'png' + } + }; + + Plotly.newPlot('mbias1_plot', data, layout, options); </script> <!-- M-bias Plot 2--> @@ -1045,7 +1059,7 @@ }, }, xaxis: { - title: 'Position in read [bp]', + title: 'Position in Read [bp]', showline: true, titlefont: { size: 18, @@ -1059,13 +1073,28 @@ }, }; - Plotly.newPlot('mbias2_plot', data, layout, {displaylogo: false}, {modeBarButtonsToRemove: ['toImage', - 'sendDataToCloud', - 'resetScale2d', - 'hoverClosestCartesian', - 'hoverCompareCartesian', - 'toggleZoom', - 'toggleSpikelines']}); + + var options2 = { + displaylogo: false, + modeBarButtonsToRemove: + ['zoom2d', + 'sendDataToCloud', + 'pan', + 'pan2d', + 'resetScale2d', + 'hoverClosestCartesian', + 'hoverCompareCartesian', + 'toggleSpikelines'] + , + toImageButtonOptions: { + filename: 'Bismark M-bias Read 2', + width: 1600, + height: 600, + format: 'png' + } + }; + + Plotly.newPlot('mbias2_plot', data, layout, options2); </script> @@ -1075,7 +1104,7 @@ </a> - <p>Analysis produced by <a href="https://github.com/FelixKrueger/Bismark"><strong>Bismark</strong></a> (version v0.19.1) - a tool to map bisulfite converted sequence reads and determine cytosine methylation states</p> + <p>Analysis produced by <a href="https://github.com/FelixKrueger/Bismark"><strong>Bismark</strong></a> (version v0.22.1) - a tool to map bisulfite converted sequence reads and determine cytosine methylation states</p> <p>Report graphs rendered using <a href="https://plot.ly/">plot.ly</a>, design last changed 07 Aug 2018</p> </footer>