view test-data/output_splitting_report.txt @ 21:120b7b35e442 draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 8fdc76a99a9dcf34549898a208317607afd18798"
author bgruening
date Thu, 22 Apr 2021 17:05:46 +0000
parents f211753166bd
children
line wrap: on
line source

dataset_76c1988f-01b0-427e-9dbe-bfb5eee1c664.dat

Parameters used to extract methylation information:
Bismark Extractor Version: v0.22.1
Bismark result file: single-end (SAM format)
Output specified: comprehensive


Processed 554 lines in total
Total number of methylation call strings processed: 554

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	8563

Total methylated C's in CpG context:	245
Total methylated C's in CHG context:	51
Total methylated C's in CHH context:	114

Total C to T conversions in CpG context:	133
Total C to T conversions in CHG context:	1762
Total C to T conversions in CHH context:	6258

C methylated in CpG context:	64.8%
C methylated in CHG context:	2.8%
C methylated in CHH context:	1.8%