# HG changeset patch
# User bgruening
# Date 1423689711 18000
# Node ID 0f8646f22b8dfc345965eb6e3922fd6d44312e1c
# Parent  b100248c35b8435df282e02b1cb0589432568049
Uploaded

diff -r b100248c35b8 -r 0f8646f22b8d bismark_bowtie2_wrapper.xml
--- a/bismark_bowtie2_wrapper.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_bowtie2_wrapper.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -20,7 +20,7 @@
         ## Change this to accommodate the number of threads you have available.
         --num-threads "\${GALAXY_SLOTS:-24}"
 
-        ##--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         --bowtie2
 
diff -r b100248c35b8 -r 0f8646f22b8d bismark_bowtie_wrapper.xml
--- a/bismark_bowtie_wrapper.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_bowtie_wrapper.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -17,7 +17,7 @@
 <![CDATA[
         bismark_wrapper.py
 
-        ##--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         ##
         ## Bismark Genome Preparation, if desired.
diff -r b100248c35b8 -r 0f8646f22b8d bismark_methylation_extractor.xml
--- a/bismark_methylation_extractor.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_methylation_extractor.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -14,7 +14,7 @@
 
         --infile $input
 
-        #--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         #if $singlePaired.sPaired == "single":
             --single-end