# HG changeset patch
# User bgruening
# Date 1556836058 14400
# Node ID 1f15ad5ca8674313c24fbf89787d94c3b1e599eb
# Parent  7bffcb6fc81d4e710ef608623d7cb1cd6a1d01d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 56a53a4dd68f1472ec256d3a8b2a44afc24018a4

diff -r 7bffcb6fc81d -r 1f15ad5ca867 bismark_bowtie2_wrapper.xml
--- a/bismark_bowtie2_wrapper.xml	Tue Feb 26 18:42:28 2019 -0500
+++ b/bismark_bowtie2_wrapper.xml	Thu May 02 18:27:38 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0.2" profile="18.01">
+<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0.3" profile="18.01">
     <description>Bisulfite reads mapper</description>
     <requirements>
         <requirement type="package" version="0.20.0">bismark</requirement>
@@ -211,7 +211,7 @@
                 <option value="custom">Full parameter list</option>
             </param>
             <!-- Full/advanced params. -->
-            <when value="dafault"></when>
+            <when value="default"></when>
             <when value="custom">
                 <!-- -N -->
                 <param name="seed_mismatches" type="integer" value="0"
@@ -253,7 +253,7 @@
                 <param name="isReportOutput" type="boolean" truevalue="true" falsevalue="false" checked="true"
                        label="Offer all report files concatenated in one file (Mapping Report)"/>
                 <param argument="--non-directional" name="non_directional" type="boolean"
-                       truevalue="--non-directional" falsevalue="" checked="false" 
+                       truevalue="--non-directional" falsevalue="" checked="false"
                        label="The sequencing library was constructed in a non strand-specific manner, alignments to all four bisulfite strands will be reported."/>
 
                 <!--end output options -->