# HG changeset patch
# User bgruening
# Date 1559735066 14400
# Node ID 78c791a11b4c68967294256c6a6bfb1ad51a5de1
# Parent  1f15ad5ca8674313c24fbf89787d94c3b1e599eb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 8a26d7022e3535d995aec277e15d7d04800965e4

diff -r 1f15ad5ca867 -r 78c791a11b4c bismark_methylation_extractor.xml
--- a/bismark_methylation_extractor.xml	Thu May 02 18:27:38 2019 -0400
+++ b/bismark_methylation_extractor.xml	Wed Jun 05 07:44:26 2019 -0400
@@ -46,7 +46,7 @@
         #if $cytosine_report['cytosine_report_selector']:
           --cytosine_report '$output_cytosine_report'
           #if $cytosine_report.refGenomeSource.genomeSource == "built_in_fasta":
-            --genome_file '{cytosine_report.refGenomeSource.built_in_fasta.fields.path}'
+            --genome_file '${cytosine_report.refGenomeSource.built_in_fasta.fields.path}'
           #else:
             --genome_file '$cytosine_report.refGenomeSource["own_file"]'
           #end if