Mercurial > repos > bgruening > bismark
changeset 9:1a88b0f2669f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 5da44021266ae8cd3cdffc045ae53490e2a59a05
| author | bgruening |
|---|---|
| date | Fri, 22 Feb 2019 14:15:46 -0500 |
| parents | 9bfe38410155 |
| children | 7bffcb6fc81d |
| files | bismark_bowtie2_wrapper.xml |
| diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/bismark_bowtie2_wrapper.xml Wed Aug 22 08:09:42 2018 -0400 +++ b/bismark_bowtie2_wrapper.xml Fri Feb 22 14:15:46 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0" profile="18.01"> +<tool id="bismark_bowtie2" name="Bismark Mapper" version="0.20.0.1" profile="18.01"> <description>Bisulfite reads mapper</description> <requirements> <requirement type="package" version="0.20.0">bismark</requirement> @@ -102,6 +102,8 @@ ## if set, disable the original behaviour $params.no_discordant + $params.non_directional + #if $params.bismark_stdout: --stdout '$output_stdout' #end if @@ -250,6 +252,8 @@ label="Write the bismark output and summary information to an extra file"/> <param name="isReportOutput" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Offer all report files concatenated in one file (Mapping Report)"/> + <param argument="--non_directional" type="boolean" truevalue="--non_directional" falsevalue="" checked="false" + label="The sequencing library was constructed in a non strand-specific manner, alignments to all four bisulfite strands will be reported."/> <!--end output options --> </when> <!-- full -->