Mercurial > repos > bgruening > cellpose
comparison cp_segmentation.py @ 4:32153c43126c draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cellpose commit 81c6be8cc2502367ae52bf093b838e9764b22c00
author | bgruening |
---|---|
date | Tue, 11 Feb 2025 14:48:08 +0000 |
parents | 1e7334a51725 |
children |
comparison
equal
deleted
inserted
replaced
3:9186100e75b5 | 4:32153c43126c |
---|---|
21 One of the ['ome.tiff', 'tiff', 'png', 'jpg'] | 21 One of the ['ome.tiff', 'tiff', 'png', 'jpg'] |
22 output_dir : str | 22 output_dir : str |
23 Folder to save the outputs. | 23 Folder to save the outputs. |
24 """ | 24 """ |
25 warnings.simplefilter('ignore') | 25 warnings.simplefilter('ignore') |
26 | 26 np.random.seed(42) |
27 with open(inputs, 'r') as param_handler: | 27 with open(inputs, 'r') as param_handler: |
28 params = json.load(param_handler) | 28 params = json.load(param_handler) |
29 | 29 |
30 gpu = params['use_gpu'] | 30 gpu = params['use_gpu'] |
31 model_type = params['model_type'] | 31 model_type = params['model_type'] |