diff column_arrange.py @ 0:f18f67056946 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/column_arrange_by_header commit 088e73e958b55dc765778641b8a84080cc289f85-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/column_arrange.py	Fri Oct 16 14:31:13 2015 -0400
@@ -0,0 +1,18 @@
+#!/usr/bin/env python 
+import pandas as pd
+import argparse
+
+parser = argparse.ArgumentParser()
+parser.add_argument('-i', '--input', help='Tabular Input File Name')
+parser.add_argument('-o','--output', help='Tabular Output File')
+parser.add_argument('-c', '--columns', nargs='+', help='Column Headers to Sort By')
+args=parser.parse_args()
+
+cols = args.columns
+table = pd.read_csv(args.input, sep='\t')
+blist = list(table.columns)
+for token in cols:
+    blist.remove(token)
+sorted_table = table[args.columns + blist]
+# write without index, seperated by tabs
+sorted_table.to_csv(args.output, sep='\t', index=False)