comparison cellprofiler.xml @ 7:eb6c08714244 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5

6:0e4dccaafef5

<tool id="cp_cellprofiler" name="CellProfiler" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>run a CellProfiler pipeline</description>
    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">0</token>
        <xml name="test_assert_content" token_n="291">
            <assert_contents>
                <has_n_lines n="@N@" />
            </assert_contents>
        </xml>
    </macros>
    <expand macro="cp_requirements" />
    <command detect_errors="aggressive"><![CDATA[
        bash '$script_file' &&
        cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline' 
        #if '$detailed_output'

7:eb6c08714244

<tool id="cp_cellprofiler" name="Run CellProfiler pipeline" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>with CellProfiler 3</description>
    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">1</token>
        <xml name="test_assert_content" token_n="291">
            <assert_contents>
                <has_n_lines n="@N@" />
            </assert_contents>
        </xml>
    </macros>
    <edam_operations>
        <edam_operation>operation_3443</edam_operation>
    </edam_operations>
    <xrefs>
        <xref type="bio.tools">CellProfiler</xref>
        <xref type="biii">cellprofiler</xref>
    </xrefs>
    <expand macro="cp_requirements" />
    <command detect_errors="aggressive"><![CDATA[
        bash '$script_file' &&
        cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline' 
        #if '$detailed_output'