comparison cellprofiler.xml @ 4:fca368c99299 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 705efdd46afce6cbb44c87d8249566ebd528b230"

3:a98608f3abc5

        </test>        

    </tests>
    
    <help>
    This tool runs a CellProfiler @CP_VERSION@ pipeline file. 

    *** Parameters ***

    images: multi-select image files
    
    pipeline: CellProfiler pipeline file(.cppipe) file.

    *** Note ***

    Only version @CP_VERSION@ pipeline can be run, other versions may cause problems.

    </help>
    <expand macro="citations" />
</tool>

4:fca368c99299

        </test>        

    </tests>
    
    <help>
    <![CDATA[

      .. class:: infomark

      **What it does**

      This is the last tool in a CellProfiler workflow and runs a CellProfiler @CP_VERSION@ pipeline file on a collection of images.


      .. class:: infomark

      **Input**

      - Collection of images.

      - Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools.

      .. class:: infomark

      **Output**

      - Images if the tool *SaveImages* was included in the workflow.
      - The features selected if the tool *ExportToSpreadsheet* was included in the workflow.

      .. class:: warningmark

      **IMPORTANT**

      Only the pipelines generated with the version @CP_VERSION@ of CellProfiler can be run, other versions may cause problems.
      ]]>
    </help>
    <expand macro="citations" />
</tool>