Mercurial > repos > bgruening > cp_cellprofiler
comparison cellprofiler.xml @ 4:fca368c99299 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 705efdd46afce6cbb44c87d8249566ebd528b230"
author | bgruening |
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date | Fri, 29 May 2020 18:16:51 -0400 |
parents | a98608f3abc5 |
children | 0e4dccaafef5 |
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3:a98608f3abc5 | 4:fca368c99299 |
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206 </test> | 206 </test> |
207 | 207 |
208 </tests> | 208 </tests> |
209 | 209 |
210 <help> | 210 <help> |
211 This tool runs a CellProfiler @CP_VERSION@ pipeline file. | 211 <![CDATA[ |
212 | 212 |
213 *** Parameters *** | 213 .. class:: infomark |
214 | 214 |
215 images: multi-select image files | 215 **What it does** |
216 | 216 |
217 pipeline: CellProfiler pipeline file(.cppipe) file. | 217 This is the last tool in a CellProfiler workflow and runs a CellProfiler @CP_VERSION@ pipeline file on a collection of images. |
218 | 218 |
219 *** Note *** | 219 |
220 | 220 .. class:: infomark |
221 Only version @CP_VERSION@ pipeline can be run, other versions may cause problems. | 221 |
222 | 222 **Input** |
223 | |
224 - Collection of images. | |
225 | |
226 - Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools. | |
227 | |
228 .. class:: infomark | |
229 | |
230 **Output** | |
231 | |
232 - Images if the tool *SaveImages* was included in the workflow. | |
233 - The features selected if the tool *ExportToSpreadsheet* was included in the workflow. | |
234 | |
235 .. class:: warningmark | |
236 | |
237 **IMPORTANT** | |
238 | |
239 Only the pipelines generated with the version @CP_VERSION@ of CellProfiler can be run, other versions may cause problems. | |
240 ]]> | |
223 </help> | 241 </help> |
224 <expand macro="citations" /> | 242 <expand macro="citations" /> |
225 </tool> | 243 </tool> |