diff macros.xml @ 0:b333df978624 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 4cb71c4badd30480d67860ff614410f37f2cc8d0"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Apr 25 18:30:59 2022 +0000
@@ -0,0 +1,58 @@
+<macros>
+    <token name="@TOOL_VERSION@">4.2.1</token>
+    <token name="@PY_VERSION@">3.8</token>
+    <token name="@FORMATS@">jpg,png,tiff,bmp,gif,pcx,ppm,psd,pbm,pgm,eps</token>
+    <token name="@SPACES@">"    "</token>
+    <!-- four spaces needed for CP pipeline file -->
+    <token name="@COMMON_HELP@">
+        .. class:: infomark
+
+        **Input**
+
+        Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools.
+
+        .. class:: infomark
+
+        **Output**
+
+        The input CellProfiler pipeline file *(.cppipe)* in addition to the settings of this module.
+
+        .. class:: warningmark
+
+        **IMPORTANT**
+
+        The first tool in a CellProfiler workflow has to be **Starting modules** and the last one **CellProfiler**. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.
+    </token>
+
+    <xml name="cp_requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">cellprofiler</requirement>
+        </requirements>
+    </xml>
+
+
+    <xml name="py_requirements">
+        <requirements>
+            <requirement type="package" version="@PY_VERSION@">python</requirement>
+        </requirements>
+    </xml>
+
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @article{McQuin_2018,
+                title = {CellProfiler 3.0: Next-generation image processing for biology},
+                author = {McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE},
+                year = {2018},
+                volume = {16(7):e2005970},
+                DOI = {10.1371/journal.pbio.2005970},
+                journal = {PLoS Biol.},
+                url = {https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2005970},
+                }
+            </citation>
+        </citations>
+    </xml>
+    
+</macros>
+