3.1.9
3.7
jpg,png,tiff,bmp,gif,pcx,ppm,psd,pbm,pgm,eps
" "
.. class:: infomark
**Input**
Existing CellProfiler pipeline file *(.cppipe)* or generated by linking CellProfiler tools.
.. class:: infomark
**Output**
The input CellProfiler pipeline file *(.cppipe)* in addition to the settings of this module.
.. class:: warningmark
**IMPORTANT**
The first tool in a CellProfiler workflow has to be **Starting modules** and the last one **CellProfiler**. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.
cellprofiler
python
@article{McQuin_2018,
title = {CellProfiler 3.0: Next-generation image processing for biology},
author = {McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE},
year = {2018},
volume = {16(7):e2005970},
DOI = {10.1371/journal.pbio.2005970},
journal = {PLoS Biol.},
url = {https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2005970},
}
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