changeset 5:d0178bdcd00e draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"

--- a/color_to_gray.py	Sat Feb 06 10:07:37 2021 +0000
+++ b/color_to_gray.py	Fri Feb 26 14:12:26 2021 +0000
@@ -127,7 +127,7 @@
              "Relative weight of the channel:1.0\n",
              "Image name:Channel1\n"
              ])
-
+    result = result.rstrip("\n")
     return result
 
 

--- a/export_to_spreadsheet.xml	Sat Feb 06 10:07:37 2021 +0000
+++ b/export_to_spreadsheet.xml	Fri Feb 26 14:12:26 2021 +0000
@@ -1,7 +1,8 @@
-<tool id="cp_export_to_spreadsheet" name="ExportToSpreadsheet" version="@CP_VERSION@">
+<tool id="cp_export_to_spreadsheet" name="ExportToSpreadsheet" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>export measurements into one or more files</description>
     <macros>
         <import>macros.xml</import>
+        <token name="@VERSION_SUFFIX@">1</token>
         <xml name="metadata_sample_row" >
             <param name="metadata_category" type="select" label="Select the metadata to use as the identifier">
                 <option value="FileName">File name</option>
@@ -76,7 +77,7 @@
     _str += FOURSPACES + "Select the metadata to use as the identifier:%s\n" % metadata_as_id
 
 
-    export_all_measurements = params["con_export_all_measurements"]["export_all_measurements"]
+    export_all_measurements = "Yes"  # always export all
 
     _str += FOURSPACES + "Export all measurement types?:%s\n" % export_all_measurements
 
@@ -95,25 +96,10 @@
 
     use_as_filename = "Yes"
 
-    if export_all_measurements == "Yes":
-        _str += FOURSPACES + "Data to export:Do not use\n"
-        _str += FOURSPACES + "Combine these object measurements with those of the previous object?:No\n"
-        _str += FOURSPACES + "File name:DATA.csv\n"
-        _str += FOURSPACES + "Use the object name for the file name?:Yes\n"
-    else:
-        for dte in params["con_export_all_measurements"]["r_data_to_export"]:
-            _str += FOURSPACES + "Data to export:%s\n" % dte["data_to_export"]
-            _str += FOURSPACES + "Combine these object measurements with those of the previous object?:No\n"
-            
-            use_as_filename = dte["con_obj_name_for_filename"]["use_as_filename"]
-
-            if use_as_filename == "No":
-                file_name = dte["con_obj_name_for_filename"]["file_name"]
-            else:
-                file_name = "DATA.csv"
-
-            _str += FOURSPACES + "File name:%s\n" % file_name
-            _str += FOURSPACES + "Use the object name for the file name?:%s\n" % use_as_filename
+    _str += FOURSPACES + "Data to export:Do not use\n"
+    _str += FOURSPACES + "Combine these object measurements with those of the previous object?:No\n"
+    _str += FOURSPACES + "File name:DATA.csv\n"
+    _str += FOURSPACES + "Use the object name for the file name?:Yes\n"
 
     return _str
 
@@ -204,33 +190,7 @@
             </when>
             <when value="No" />
         </conditional>
-        <conditional name="con_export_all_measurements">
-            <param name="export_all_measurements" type="select" display="radio" label="Export all measurement types?" help="Select 'Yes' to export every category of measurement. ExportToSpreadsheet will create one data file for each object produced in the pipeline, as well as per-image, per-experiment and object relationships, if relevant.">
-                <option value="Yes">Yes</option>
-                <option value="No">No</option>
-            </param>
-            <when value="No">
-                <repeat name="r_data_to_export" title="another data set" min="1">
-                    <param name="data_to_export" type="select" label="Data to export" help="This option will writ out a file of measurements for the given category.">                        
-                        <option value="Image">Image</option>
-                        <option value="Experiment">Experiment</option>
-                        <option value="Object relationship">Object relationship</option>
-                        <option value="Do not use">Do not use</option>
-                    </param>
-                    <conditional name="con_obj_name_for_filename">
-                        <param name="use_as_filename" type="select" display="radio" label="Use the object name for the file name?" help="Select 'Yes' to use the object name as selected above to generate a file name for the spreadsheet.">
-                            <option value="Yes">Yes</option>
-                            <option value="No">No</option>
-                        </param>
-                        <when value="No">
-                            <param name="file_name" type="text" label="File name" />
-                        </when>
-                        <when value="Yes" />
-                    </conditional>
-                </repeat>
-            </when>
-            <when value="Yes" />
-        </conditional>
+
     </inputs>
 
     <outputs>
@@ -249,18 +209,12 @@
             <param name="overwrite_existing_file" value="Yes" />
             <param name="add_metadata_column_to_object" value="Yes" />
             <param name="represent_nan" value="NaN" />
-            <conditional name="con_measurement_export">
-                <param name="export_measurement" value="No" />
-            </conditional>
             <param name="calc_mean" value="Yes" />
             <param name="calc_median" value="Yes" />
             <param name="calc_standard_deviation" value="Yes" />
             <conditional name="con_create_gene_pattern">
                 <param name="create_gene_pattern" value="No" />
             </conditional>
-            <conditional name="con_export_all_measurements">
-                <param name="export_all_measurements" value="Yes" />
-            </conditional>
             <expand macro="test_out_file" file="export_to_spreadsheet.cppipe" />
         </test>
 
@@ -275,9 +229,6 @@
             <param name="overwrite_existing_file" value="Yes" />
             <param name="add_metadata_column_to_object" value="Yes" />
             <param name="represent_nan" value="NaN" />
-            <conditional name="con_measurement_export">
-                <param name="export_measurement" value="No" />
-            </conditional>
             <param name="calc_mean" value="Yes" />
             <param name="calc_median" value="Yes" />
             <param name="calc_standard_deviation" value="Yes" />
@@ -289,13 +240,10 @@
                       <param name="metadata_measurement" value="DNA" />
                 </conditional>
             </conditional>
-            <conditional name="con_export_all_measurements">
-                <param name="export_all_measurements" value="Yes" />
-            </conditional>
             <expand macro="test_out_file" file="export_to_spreadsheet_create_gene_metadata.cppipe" />
         </test>
         <test>
-            <!-- create gene=yes , source of sampe row name= image filename, export all = no-->
+            <!-- create gene=yes , source of sampe row name= image filename-->
             <expand macro="test_input_pipeline_param" />
             <param name="delimiter" value="Tab" />
             <param name="output_file_location" value="Default Output Folder" />
@@ -306,9 +254,6 @@
             <param name="overwrite_existing_file" value="Yes" />
             <param name="add_metadata_column_to_object" value="Yes" />
             <param name="represent_nan" value="NaN" />
-            <conditional name="con_measurement_export">
-                <param name="export_measurement" value="No" />
-            </conditional>
             <param name="calc_mean" value="Yes" />
             <param name="calc_median" value="Yes" />
             <param name="calc_standard_deviation" value="Yes" />
@@ -319,21 +264,11 @@
                      <param name="image_filename_cat" value="DNA" />
                 </conditional>
             </conditional>
-            <conditional name="con_export_all_measurements">
-                <param name="export_all_measurements" value="No" />
-                <repeat name="r_data_to_export">
-                    <param name="data_to_export" value="Image" />
-                     <conditional name="con_obj_name_for_filename">
-                        <param name="use_as_filename" value="No" />
-                        <param name="file_name" value="data.csv" />
-                     </conditional>
-                </repeat>
-            </conditional>
             <expand macro="test_out_file" file="export_to_spreadsheet_create_gene_image_filename.cppipe" />
         </test>
 
         <test>
-            <!--repeat test for multiple data export. create gene=yes , source of sampe row name= image filename, export all = no-->
+            <!--repeat test for multiple data export. create gene=yes , source of sampe row name= image filename-->
             <expand macro="test_input_pipeline_param" />
             <param name="delimiter" value="Tab" />
             <param name="output_file_location" value="Default Output Folder" />
@@ -344,9 +279,6 @@
             <param name="overwrite_existing_file" value="Yes" />
             <param name="add_metadata_column_to_object" value="Yes" />
             <param name="represent_nan" value="NaN" />
-            <conditional name="con_measurement_export">
-                <param name="export_measurement" value="No" />
-            </conditional>
             <param name="calc_mean" value="Yes" />
             <param name="calc_median" value="Yes" />
             <param name="calc_standard_deviation" value="Yes" />
@@ -357,22 +289,6 @@
                      <param name="image_filename_cat" value="DNA" />
                 </conditional>
             </conditional>
-            <conditional name="con_export_all_measurements">
-                <param name="export_all_measurements" value="No" />
-                <repeat name="r_data_to_export">
-                    <param name="data_to_export" value="Image" />
-                     <conditional name="con_obj_name_for_filename">
-                        <param name="use_as_filename" value="No" />
-                        <param name="file_name" value="data.csv" />
-                     </conditional>
-                </repeat>
-                <repeat name="r_data_to_export">
-                    <param name="data_to_export" value="Experiment" />
-                     <conditional name="con_obj_name_for_filename">
-                        <param name="use_as_filename" value="Yes" />
-                     </conditional>
-                </repeat>
-            </conditional>
             <expand macro="test_out_file" file="export_to_spreadsheet_multi.cppipe" />
         </test>
     </tests>

--- a/starting_modules.py	Sat Feb 06 10:07:37 2021 +0000
+++ b/starting_modules.py	Fri Feb 26 14:12:26 2021 +0000
@@ -11,7 +11,7 @@
 def write_images():
     filter_images = params['images']['filter_images']
 
-    _str = "\nImages:[module_num:1|svn_version:\\'Unknown\\'|variable_revision_number:2|show_window:False|notes:\\x5B\\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]\n"
+    _str = "\nImages:[module_num:1|svn_version:\\'Unknown\\'|variable_revision_number:2|show_window:False|notes:\\x5B\\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\\'\\x5D|batch_state:array(\\x5B\\x5D, dtype=uint8)|enabled:True|wants_pause:False]\n"
     _str += FOURSPACES + ":\n"
     _str += FOURSPACES + "Filter images?:%s\n" % filter_images
     _str += FOURSPACES + "Select the rule criteria:and (extension does isimage) (directory doesnot startwith \".\")\n"
@@ -28,7 +28,7 @@
     else:
         method_count = 1
 
-    _str = "\nMetadata:[module_num:2|svn_version:\\'Unknown\\'|variable_revision_number:4|show_window:False|notes:\\x5B\\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]\n"
+    _str = "\nMetadata:[module_num:2|svn_version:\\'Unknown\\'|variable_revision_number:4|show_window:False|notes:\\x5B\\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\\'\\x5D|batch_state:array(\\x5B\\x5D, dtype=uint8)|enabled:True|wants_pause:False]\n"
     _str += FOURSPACES + "Extract metadata?:%s\n" % extract
 
     if extract == "No":

--- a/starting_modules_nameandtypes.xml	Sat Feb 06 10:07:37 2021 +0000
+++ b/starting_modules_nameandtypes.xml	Fri Feb 26 14:12:26 2021 +0000
@@ -25,7 +25,7 @@
         </param>
         <param name="contain" type="select">
             <option value="contain">Contain</option>
-            <option value="Contain regular expression">Contain regular expression</option>
+            <option value="containregexp">Contain regular expression</option>
             <option value="startwith">Start with</option>
             <option value="endwith">End with</option>
             <option value="Exactly match">Exactly match</option>

--- a/test-data/color_to_gray.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/color_to_gray.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -76,4 +76,3 @@
     Channel number:Red\x3A 1
     Relative weight of the channel:1.0
     Image name:Channel1
-

--- a/test-data/color_to_gray_combine_channels.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/color_to_gray_combine_channels.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -79,4 +79,3 @@
     Channel number:3
     Relative weight of the channel:0.5
     Image name:Channel1
-

--- a/test-data/color_to_gray_split_channels.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/color_to_gray_split_channels.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -79,4 +79,3 @@
     Channel number:3
     Relative weight of the channel:1.0
     Image name:Image3
-

--- a/test-data/color_to_gray_split_hsv.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/color_to_gray_split_hsv.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -76,4 +76,3 @@
     Channel number:Red\x3A 1
     Relative weight of the channel:1.0
     Image name:Channel1
-

--- a/test-data/color_to_gray_split_rgb.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/color_to_gray_split_rgb.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -76,4 +76,3 @@
     Channel number:Red\x3A 1
     Relative weight of the channel:1.0
     Image name:Channel1
-

--- a/test-data/common-complicated.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/common-complicated.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:4
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/common-nogroup.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/common-nogroup.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:4
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/common.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/common.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:4
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/common_image_math.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/common_image_math.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:6
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/convert_objects_to_image.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/convert_objects_to_image.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/display_data_on_image.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/display_data_on_image.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/enhance_or_suppress_features.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/enhance_or_suppress_features.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/export_to_spreadsheet.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/export_to_spreadsheet.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/export_to_spreadsheet_create_gene_image_filename.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/export_to_spreadsheet_create_gene_image_filename.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -64,13 +64,13 @@
     Select source of sample row name:Image filename
     Select the image to use as the identifier:DNA
     Select the metadata to use as the identifier:None
-    Export all measurement types?:No
+    Export all measurement types?:Yes
     Press button to select measurements:
     Representation of Nan/Inf:NaN
     Add a prefix to file names?:Yes
     Filename prefix:MyExpt_
     Overwrite existing files without warning?:Yes
-    Data to export:Image
+    Data to export:Do not use
     Combine these object measurements with those of the previous object?:No
-    File name:data.csv
-    Use the object name for the file name?:No
+    File name:DATA.csv
+    Use the object name for the file name?:Yes

--- a/test-data/export_to_spreadsheet_create_gene_metadata.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/export_to_spreadsheet_create_gene_metadata.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/export_to_spreadsheet_multi.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/export_to_spreadsheet_multi.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -64,17 +64,13 @@
     Select source of sample row name:Image filename
     Select the image to use as the identifier:DNA
     Select the metadata to use as the identifier:None
-    Export all measurement types?:No
+    Export all measurement types?:Yes
     Press button to select measurements:
     Representation of Nan/Inf:NaN
     Add a prefix to file names?:Yes
     Filename prefix:MyExpt_
     Overwrite existing files without warning?:Yes
-    Data to export:Image
-    Combine these object measurements with those of the previous object?:No
-    File name:data.csv
-    Use the object name for the file name?:No
-    Data to export:Experiment
+    Data to export:Do not use
     Combine these object measurements with those of the previous object?:No
     File name:DATA.csv
     Use the object name for the file name?:Yes

--- a/test-data/gray_to_color.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/gray_to_color.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/identify_primary_objects.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Otsu
     Threshold smoothing scale:1.3488
     Threshold correction factor:0.9
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:0
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Two classes

--- a/test-data/identify_primary_objects_adv_adaptive_otsu.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_adv_adaptive_otsu.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Otsu
     Threshold smoothing scale:1.5000
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:0
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Three classes

--- a/test-data/identify_primary_objects_adv_global_manual.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_adv_global_manual.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Manual
     Threshold smoothing scale:1.3488
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:1
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Two classes

--- a/test-data/identify_primary_objects_adv_global_mce.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_adv_global_mce.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Minimum cross entropy
     Threshold smoothing scale:1.5000
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:0
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Two classes

--- a/test-data/identify_primary_objects_adv_global_measurement.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_adv_global_measurement.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Measurement
     Threshold smoothing scale:1.3488
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.1,0.4
+    Lower and upper bounds on threshold:0.1000,0.4000
     Manual threshold:0
     Select the measurement to threshold with:FileName_DNA
     Two-class or three-class thresholding?:Two classes

--- a/test-data/identify_primary_objects_adv_global_rb.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_adv_global_rb.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:RobustBackground
     Threshold smoothing scale:1.4000
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:0
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Two classes

--- a/test-data/identify_primary_objects_noadv.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/identify_primary_objects_noadv.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -74,7 +74,7 @@
     Thresholding method:Minimum cross entropy
     Threshold smoothing scale:1.3488
     Threshold correction factor:1.0
-    Lower and upper bounds on threshold:0.0,1.0
+    Lower and upper bounds on threshold:0.0000,1.0000
     Manual threshold:0
     Select the measurement to threshold with:None
     Two-class or three-class thresholding?:Two classes

--- a/test-data/image_math_1.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/image_math_1.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:7
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/image_math_2.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/image_math_2.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:7
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/image_math_3.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/image_math_3.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:7
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/mask_image.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/mask_image.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_granularity.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_granularity.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_image_area_occupied.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_image_area_occupied.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_image_intensity.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_image_intensity.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_image_quality.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_image_quality.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_object_intensity.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_object_intensity.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_object_size_shape.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_object_size_shape.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/measure_texture.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/measure_texture.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/overlay_outlines.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/overlay_outlines.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/overlay_outlines_blank_color.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/overlay_outlines_blank_color.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/overlay_outlines_blank_grayscale.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/overlay_outlines_blank_grayscale.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/overlay_outlines_non_blank_color.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/overlay_outlines_non_blank_color.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/overlay_outlines_non_blank_grayscale.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/overlay_outlines_non_blank_grayscale.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/relate_objects.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/relate_objects.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/save_images.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/save_images.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/tile.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/tile.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -65,4 +65,3 @@
     Automatically calculate number of columns?:Yes
     Select an additional image to tile:OutlineImage
     Select an additional image to tile:TrackedCells
-

--- a/test-data/tile_across_cycles.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/tile_across_cycles.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -63,4 +63,3 @@
     Use meander mode?:No
     Automatically calculate number of rows?:Yes
     Automatically calculate number of columns?:No
-

--- a/test-data/tile_across_cyles.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/tile_across_cyles.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}

--- a/test-data/track_object.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:No
     Cost of cell to empty matching:15.0
     Weight of area difference in function matching cost:25.0
-

--- a/test-data/track_object_distance_no_filter_min.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object_distance_no_filter_min.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:No
     Cost of cell to empty matching:15.0
     Weight of area difference in function matching cost:25.0
-

--- a/test-data/track_object_follow_neighbors.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object_follow_neighbors.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:Yes
     Cost of cell to empty matching:11.0
     Weight of area difference in function matching cost:20.0
-

--- a/test-data/track_object_lap_velocity.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object_lap_velocity.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:No
     Cost of cell to empty matching:15.0
     Weight of area difference in function matching cost:25.0
-

--- a/test-data/track_object_measurement_intensity.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object_measurement_intensity.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:No
     Cost of cell to empty matching:15.0
     Weight of area difference in function matching cost:25.0
-

--- a/test-data/track_object_overlap_no_filter_max.cppipe	Sat Feb 06 10:07:37 2021 +0000
+++ b/test-data/track_object_overlap_no_filter_max.cppipe	Fri Feb 26 14:12:26 2021 +0000
@@ -5,12 +5,12 @@
 ModuleCount:5
 HasImagePlaneDetails:False
 
-Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     :
     Filter images?:Images only
     Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".")
 
-Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False]
+Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
     Extract metadata?:Yes
     Metadata data type:Text
     Metadata types:{}
@@ -82,4 +82,3 @@
     Use advanced configuration parameters:No
     Cost of cell to empty matching:15.0
     Weight of area difference in function matching cost:25.0
-

--- a/tile.py	Sat Feb 06 10:07:37 2021 +0000
+++ b/tile.py	Fri Feb 26 14:12:26 2021 +0000
@@ -68,7 +68,7 @@
             result += INDENTATION.join(
                 [f"{INDENTATION}Select an additional image to tile:{get_json_value(img, 'additional_img')}\n"
                  ])
-
+    result = result.rstrip("\n")
     return result
 
 

--- a/track_objects.py	Sat Feb 06 10:07:37 2021 +0000
+++ b/track_objects.py	Fri Feb 26 14:12:26 2021 +0000
@@ -167,7 +167,7 @@
          f"Cost of cell to empty matching:{cost_of_cell}\n",
          f"Weight of area difference in function matching cost:{weight_of_area_diff}\n"
          ])
-
+    result = result.rstrip("\n")
     return result