Mercurial > repos > bgruening > cp_identify_primary_objects

comparison identify_primary_objects.xml @ 5:b6eec6087271 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
author bgruening
date Fri, 26 Feb 2021 14:17:23 +0000
parents 52c01fb29b2a
children 87d4d92d7487
comparison
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4:993faa34333b 5:b6eec6087271
1 <tool id="cp_identify_primary_objects" name="IdentifyPrimaryObjects" version="@CP_VERSION@"> 1 <tool id="cp_identify_primary_objects" name="IdentifyPrimaryObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>identify biological objects of interest</description> 2 <description>identify biological objects of interest</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <token name="@VERSION_SUFFIX@">1</token>
6 <xml name="ipo_common"> 7 <xml name="ipo_common">
7 <param name="input_from_nat" type="text" label="Enter the name of the input image (from NamesAndTypes)"> 8 <param name="input_from_nat" type="text" label="Enter the name of the input image (from NamesAndTypes)">
8 <expand macro="text_validator" /> 9 <expand macro="text_validator" />
9 </param> 10 </param>
10 <param name="name_to_be_identified" type="text" label="Enter the name of the primary objects to be identified"> 11 <param name="name_to_be_identified" type="text" label="Enter the name of the primary objects to be identified">
341 _str += FOURSPACES + "Threshold settings version:10\n" 342 _str += FOURSPACES + "Threshold settings version:10\n"
342 _str += FOURSPACES + "Threshold strategy:%s\n" % threshold_strategy 343 _str += FOURSPACES + "Threshold strategy:%s\n" % threshold_strategy
343 _str += FOURSPACES + "Thresholding method:%s\n" % threshold_method 344 _str += FOURSPACES + "Thresholding method:%s\n" % threshold_method
344 _str += FOURSPACES + "Threshold smoothing scale:%.4f\n" % threshold_smoothing_scale 345 _str += FOURSPACES + "Threshold smoothing scale:%.4f\n" % threshold_smoothing_scale
345 _str += FOURSPACES + "Threshold correction factor:%.1f\n" % threshold_correction_factor 346 _str += FOURSPACES + "Threshold correction factor:%.1f\n" % threshold_correction_factor
346 _str += FOURSPACES + "Lower and upper bounds on threshold:%.1f,%.1f\n" % (threshold_lower, threshold_upper) 347 _str += FOURSPACES + "Lower and upper bounds on threshold:%.4f,%.4f\n" % (threshold_lower, threshold_upper)
347 _str += FOURSPACES + "Manual threshold:%d\n" % manual_threshold 348 _str += FOURSPACES + "Manual threshold:%d\n" % manual_threshold
348 _str += FOURSPACES + "Select the measurement to threshold with:%s\n" % threshold_measurement 349 _str += FOURSPACES + "Select the measurement to threshold with:%s\n" % threshold_measurement
349 _str += FOURSPACES + "Two-class or three-class thresholding?:%s\n" % threshold_class 350 _str += FOURSPACES + "Two-class or three-class thresholding?:%s\n" % threshold_class
350 _str += FOURSPACES + "Assign pixels in the middle intensity class to the foreground or the background?:%s\n" % assign_pixel 351 _str += FOURSPACES + "Assign pixels in the middle intensity class to the foreground or the background?:%s\n" % assign_pixel
351 _str += FOURSPACES + "Size of adaptive window:%d\n" % adaptive_window 352 _str += FOURSPACES + "Size of adaptive window:%d\n" % adaptive_window