comparison identify_primary_objects.xml @ 6:87d4d92d7487 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5

5:b6eec6087271

<tool id="cp_identify_primary_objects" name="IdentifyPrimaryObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>identify biological objects of interest</description>

    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">1</token>
        <xml name="ipo_common">
            <param name="input_from_nat" type="text" label="Enter the name of the input image (from NamesAndTypes)">
                <expand macro="text_validator" />
            </param>
            <param name="name_to_be_identified" type="text" label="Enter the name of the primary objects to be identified">

                    <br> - Otsu: This approach calculates the threshold separating the two classes of pixels (foreground and background) by minimizing the variance within the each class.
                    ]]>
            </help>
        </xml>
    </macros>

    <expand macro="py_requirements"/>
    <expand macro="cmd_modules" />
    <configfiles>
        <inputs name="inputs" />

6:87d4d92d7487

<tool id="cp_identify_primary_objects" name="IdentifyPrimaryObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>with CellProfiler</description>

    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">2</token>
        <xml name="ipo_common">
            <param name="input_from_nat" type="text" label="Enter the name of the input image (from NamesAndTypes)">
                <expand macro="text_validator" />
            </param>
            <param name="name_to_be_identified" type="text" label="Enter the name of the primary objects to be identified">

                    <br> - Otsu: This approach calculates the threshold separating the two classes of pixels (foreground and background) by minimizing the variance within the each class.
                    ]]>
            </help>
        </xml>
    </macros>

    <edam_operations>
        <edam_operation>operation_3443</edam_operation>
    </edam_operations>
    <xrefs>
        <xref type="bio.tools">CellProfiler</xref>
        <xref type="biii">cellprofiler</xref>
    </xrefs>

    <expand macro="py_requirements"/>
    <expand macro="cmd_modules" />
    <configfiles>
        <inputs name="inputs" />