Mercurial > repos > bgruening > cp_overlay_outlines
comparison overlay_outlines.xml @ 2:b44b081bcf37 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
| author | bgruening |
|---|---|
| date | Sun, 05 Nov 2023 09:39:27 +0000 |
| parents | 91560258e972 |
| children |
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| 1:91560258e972 | 2:b44b081bcf37 |
|---|---|
| 1 <tool id="cp_overlay_outlines" name="OverlayOutlines" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5"> | 1 <tool id="cp_overlay_outlines" name="OverlayOutlines" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5"> |
| 2 <description> places outlines of objects over a desired image. </description> | 2 <description>with CellProfiler</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 <token name="@VERSION_SUFFIX@">0</token> | 5 <token name="@VERSION_SUFFIX@">1</token> |
| 6 <xml name="non_blank"> | 6 <xml name="non_blank"> |
| 7 <param name="image_to_outline" type="text" label="Enter the name of image on which to display outlines" > | 7 <param name="image_to_outline" type="text" label="Enter the name of image on which to display outlines" > |
| 8 <help> | 8 <help> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 Choose the image to serve as the background for the outlines. You can choose from images that were loaded or created by modules previous to this one. | 10 Choose the image to serve as the background for the outlines. You can choose from images that were loaded or created by modules previous to this one. |
| 58 <option value="Thick">Thick</option> | 58 <option value="Thick">Thick</option> |
| 59 </param> | 59 </param> |
| 60 </xml> | 60 </xml> |
| 61 | 61 |
| 62 </macros> | 62 </macros> |
| 63 <edam_operations> | |
| 64 <edam_operation>operation_3443</edam_operation> | |
| 65 </edam_operations> | |
| 66 <xrefs> | |
| 67 <xref type="bio.tools">CellProfiler</xref> | |
| 68 <xref type="biii">cellprofiler</xref> | |
| 69 </xrefs> | |
| 63 <expand macro="py_requirements"/> | 70 <expand macro="py_requirements"/> |
| 64 <command detect_errors="exit_code"> | 71 <command detect_errors="exit_code"> |
| 65 <![CDATA[ | 72 <![CDATA[ |
| 66 python '$__tool_directory__/overlay_outlines.py' -p '$input_pipeline' -i '$input_json' | 73 python '$__tool_directory__/overlay_outlines.py' -p '$input_pipeline' -i '$input_json' |
| 67 ]]> | 74 ]]> |