Mercurial > repos > bgruening > cp_relate_objects
comparison test-data/identify_primary_objects.cppipe @ 5:3a3033222f61 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
| author | bgruening |
|---|---|
| date | Fri, 26 Feb 2021 14:20:37 +0000 |
| parents | f3f45c42bc36 |
| children |
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| 4:8083a87d2fdf | 5:3a3033222f61 |
|---|---|
| 3 DateRevision:319 | 3 DateRevision:319 |
| 4 GitHash: | 4 GitHash: |
| 5 ModuleCount:5 | 5 ModuleCount:5 |
| 6 HasImagePlaneDetails:False | 6 HasImagePlaneDetails:False |
| 7 | 7 |
| 8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] | 8 Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'To begin creating your project, use the Images module to compile a list of files and/or folders that you want to analyze. You can also specify a set of rules to include only the desired files in your selected folders.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False] |
| 9 : | 9 : |
| 10 Filter images?:Images only | 10 Filter images?:Images only |
| 11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".") | 11 Select the rule criteria:and (extension does isimage) (directory doesnot startwith ".") |
| 12 | 12 |
| 13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\']|batch_state:array([], dtype=uint8)|enabled:True|wants_pause:False] | 13 Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False] |
| 14 Extract metadata?:Yes | 14 Extract metadata?:Yes |
| 15 Metadata data type:Text | 15 Metadata data type:Text |
| 16 Metadata types:{} | 16 Metadata types:{} |
| 17 Extraction method count:1 | 17 Extraction method count:1 |
| 18 Metadata extraction method:Extract from file/folder names | 18 Metadata extraction method:Extract from file/folder names |
| 72 Threshold settings version:10 | 72 Threshold settings version:10 |
| 73 Threshold strategy:Global | 73 Threshold strategy:Global |
| 74 Thresholding method:Otsu | 74 Thresholding method:Otsu |
| 75 Threshold smoothing scale:1.3488 | 75 Threshold smoothing scale:1.3488 |
| 76 Threshold correction factor:0.9 | 76 Threshold correction factor:0.9 |
| 77 Lower and upper bounds on threshold:0.0,1.0 | 77 Lower and upper bounds on threshold:0.0000,1.0000 |
| 78 Manual threshold:0 | 78 Manual threshold:0 |
| 79 Select the measurement to threshold with:None | 79 Select the measurement to threshold with:None |
| 80 Two-class or three-class thresholding?:Two classes | 80 Two-class or three-class thresholding?:Two classes |
| 81 Assign pixels in the middle intensity class to the foreground or the background?:Foreground | 81 Assign pixels in the middle intensity class to the foreground or the background?:Foreground |
| 82 Size of adaptive window:500 | 82 Size of adaptive window:500 |