comparison macros.xml @ 3:a45d360ae9d9 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit c3917e27eb1c1deeb381aa0dc8161c07699562fb"

2:609911f19ab2

        The first tool in a CellProfiler workflow has to be **Starting modules** and the last one **CellProfiler**. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.
    </token>


    <xml name="output_pipeline_macro">
        <data name="out_file" from_work_dir="output" format="txt"/>
    </xml>


    <xml name="input_pipeline_macro">
        <param name="input_pipeline" type="data" format="data" label="Select the input CellProfiler pipeline"/>
    </xml>


    <xml name="cp_requirements">

        <validator type="regex" message="Only numbers, letters, hyphen, underscore and spaces are allowed">^[A-Za-z0-9 _-]*$</validator>
    </xml>


    <xml name="test_input_pipeline_param">
        <param name="input_pipeline" value="common.txt" />
    </xml>


    <xml name="test_out_file" token_file="common.txt">
        <output name="out_file" ftype="txt" file="@FILE@" lines_diff="0"/>
    </xml>


    <xml name="help" token_module="common">
        <help>
            This tool appends the inputs of the @MODULE@ module to an existing pipeline file (.cppipe)

            Input: existing pipeline file

            Output: new pipeline file

            Combine this tool with "Common" tool and "CellProfiler" tool together to run the current module alone.
        </help>
    </xml>
</macros>

3:a45d360ae9d9

        The first tool in a CellProfiler workflow has to be **Starting modules** and the last one **CellProfiler**. You can also execute the entire pipeline with the final CellProfiler tool, in which you feed in the images you want to process as well.
    </token>


    <xml name="output_pipeline_param">
        <data name="output_pipeline" from_work_dir="output.cppipe" format="txt"/>
    </xml>


    <xml name="input_pipeline_param">
        <param name="input_pipeline" type="data" format="data" label="Select the input CellProfiler pipeline"/>
    </xml>


    <xml name="cp_requirements">

        <validator type="regex" message="Only numbers, letters, hyphen, underscore and spaces are allowed">^[A-Za-z0-9 _-]*$</validator>
    </xml>


    <xml name="test_input_pipeline_param">
        <param name="input_pipeline" value="common.cppipe" />
    </xml>


    <xml name="test_out_file" token_file="common.cppipe">
        <output name="output_pipeline" ftype="txt" file="@FILE@" lines_diff="0"/>
    </xml>
    
</macros>