comparison track_objects.xml @ 2:972d2c365739 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5

1:1fd453cd757b

<tool id="cp_track_objects" name="TrackObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
    <description> tracking objects throughout sequential frames of a series of images</description>
    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">0</token>
        <xml name="common">
            <conditional name="con_filter_by_lifetime">
                <param name="filter_by_lifetime" type="select" label="Filter objects by lifetime?" help = "Select Yes if you want objects to be filtered by their lifetime, i.e., total duration in frames. This is useful for marking objects which transiently appear and disappear, such as the results of a mis-segmentation.">
                    <option value="Yes">Yes</option>
                    <option value="No">No</option>

                </when>
            </conditional>

        </xml>
    </macros>
    <expand macro="py_requirements"/>
    <command detect_errors="exit_code">
        <![CDATA[
            python '$__tool_directory__/track_objects.py' -p '$input_pipeline' -i '$input_json'
            ]]>

2:972d2c365739

<tool id="cp_track_objects" name="TrackObjects" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
    <description>with CellProfiler</description>
    <macros>
        <import>macros.xml</import>
        <token name="@VERSION_SUFFIX@">1</token>
        <xml name="common">
            <conditional name="con_filter_by_lifetime">
                <param name="filter_by_lifetime" type="select" label="Filter objects by lifetime?" help = "Select Yes if you want objects to be filtered by their lifetime, i.e., total duration in frames. This is useful for marking objects which transiently appear and disappear, such as the results of a mis-segmentation.">
                    <option value="Yes">Yes</option>
                    <option value="No">No</option>

                </when>
            </conditional>

        </xml>
    </macros>
    <edam_operations>
        <edam_operation>operation_3443</edam_operation>
    </edam_operations>
    <xrefs>
        <xref type="bio.tools">CellProfiler</xref>
        <xref type="biii">cellprofiler</xref>
    </xrefs>
    <expand macro="py_requirements"/>
    <command detect_errors="exit_code">
        <![CDATA[
            python '$__tool_directory__/track_objects.py' -p '$input_pipeline' -i '$input_json'
            ]]>