comparison macros.xml @ 0:38b8e1d2bb78 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/im-pipelines commit 598dd288a384481b7602a0f6322c5081dc8da5d9"

0:38b8e1d2bb78

<macros>
    <token name="@TOOL_VERSION@">1.1.3</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">im-pipelines</requirement>
        </requirements>
    </xml>

    <xml name="input">
        <param name="infile" type="data" format="sdf" label="Input file" help="Input file in SDF or JSON format"/>
    </xml>

    <xml name="outputs" token_output_format="sdf" token_filetype="sdf">
        <outputs>
            <data name="outfile" format="@FILETYPE@" label="Output (@FILETYPE@) for ${tool.name}" from_work_dir="outp.@OUTPUT_FORMAT@"/>
            <data name="logfile" format="txt" label="Logfile for ${tool.name}"/>
        </outputs>
    </xml>

    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @article{rdkit,
                    author = {Greg Landrum and others},
                    title = {RDKit: Open-source cheminformatics},
                    url = {http://www.rdkit.org}
            }</citation>
            <citation type="bibtex">
                @article{im-pipelines,
                    author = {Tim Dudgeon and others},
                    title = {InformaticsMatters pipeline components for cheminformatics and computational chemistry.},
                    url = {https://github.com/InformaticsMatters/pipelines}
            }</citation>
            <yield />
        </citations>
    </xml>
</macros>