of molecule similarityscikit_learnmatplotlib
mds_plot.py
-i $infile
--oformat $oformat
-o $outfile
**Note**. You need an NxN similarity matrix as input. Use the NxN Clustering tool to generate one.
**What it does**
Scatter plot of similarity matrix after embeding in 2D coordinates using Multidimensional Scaling (MDS).
-----
**Example**
* input::
Similarity Matrix
* output::
Scatter plot
.. image:: $PATH_TO_IMAGES/mds_plot.png