Mercurial > repos > bgruening > data_manager_motus
comparison readme.md @ 0:0370fe3cf518 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
| author | bgruening |
|---|---|
| date | Thu, 10 Oct 2024 11:00:40 +0000 |
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| -1:000000000000 | 0:0370fe3cf518 |
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| 1 # Serve locally | |
| 2 | |
| 3 * Install conda/mamba | |
| 4 | |
| 5 ``` | |
| 6 mamba create -n planemo-env python=3.7 | |
| 7 mamba activate planemo-env | |
| 8 pip install -U planemo | |
| 9 ``` | |
| 10 | |
| 11 ## Run DM togehter with tool | |
| 12 | |
| 13 ``` | |
| 14 cd <DM-path>/motus-DM | |
| 15 planemo serve data_manager/motus_db_fetcher.xml <motus_profiler PATH>/motus_profiler.xml --biocontainers --galaxy_root ~/git/galaxy | |
| 16 ``` | |
| 17 | |
| 18 ## Check if tool and DM work together | |
| 19 | |
| 20 In Galaxy go to: | |
| 21 | |
| 22 * Admin | |
| 23 * Local Data | |
| 24 * Check if DM is in **Installed Data Managers** | |
| 25 * Click it | |
| 26 * Run the tool with Database type 3.1.0 | |
| 27 * Admin | |
| 28 * Data Tables | |
| 29 * motus_db_versioned | |
| 30 * Check if new table was made | |
| 31 * Go to the tool | |
| 32 * Check if new table can be found by: `A pre-installed mOTUs database` |