Mercurial > repos > bgruening > data_manager_motus

diff data_manager_conf.xml @ 0:0370fe3cf518 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
author bgruening
date Thu, 10 Oct 2024 11:00:40 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Thu Oct 10 11:00:40 2024 +0000
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<data_managers>
+
+    <data_manager tool_file="data_manager/motus_db_fetcher.xml" id="motus_db_fetcher">
+        <data_table name="motus_db_versioned">
+            <output>
+                <column name="value" />
+                <column name="version" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <move type="directory" relativize_symlinks="True">
+                        <source>${path}</source>
+                        <!-- the /db_mOTU path is important since motus looks for a folder named like this  -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">motus_database/${value}/db_mOTU</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/motus_database/${value}/db_mOTU</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+
+</data_managers>