Mercurial > repos > bgruening > data_manager_motus
diff readme.md @ 0:0370fe3cf518 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
| author | bgruening |
|---|---|
| date | Thu, 10 Oct 2024 11:00:40 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.md Thu Oct 10 11:00:40 2024 +0000 @@ -0,0 +1,32 @@ +# Serve locally + +* Install conda/mamba + +``` +mamba create -n planemo-env python=3.7 +mamba activate planemo-env +pip install -U planemo +``` + +## Run DM togehter with tool + +``` +cd <DM-path>/motus-DM +planemo serve data_manager/motus_db_fetcher.xml <motus_profiler PATH>/motus_profiler.xml --biocontainers --galaxy_root ~/git/galaxy +``` + +## Check if tool and DM work together + +In Galaxy go to: + +* Admin +* Local Data +* Check if DM is in **Installed Data Managers** +* Click it +* Run the tool with Database type 3.1.0 +* Admin +* Data Tables +* motus_db_versioned +* Check if new table was made +* Go to the tool +* Check if new table can be found by: `A pre-installed mOTUs database` \ No newline at end of file