Mercurial > repos > bgruening > deeptools
comparison tool_dependencies.xml @ 1:a22ccc261bb3 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 15 Nov 2013 07:57:48 -0500 |
| parents | d957e25e18a3 |
| children | 9441b4e5d2d6 |
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| 0:d957e25e18a3 | 1:a22ccc261bb3 |
|---|---|
| 52 </actions> | 52 </actions> |
| 53 </install> | 53 </install> |
| 54 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> | 54 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme> |
| 55 </package> | 55 </package> |
| 56 | 56 |
| 57 <package name="deepTools" version="1.5.1_91b873c095bb4ca44da99e57d8b49784508aa98b"> | 57 <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a"> |
| 58 <install version="1.0"> | 58 <install version="1.0"> |
| 59 <actions> | 59 <actions> |
| 60 <!-- populate the environment variables from the dependend repos --> | 60 <!-- populate the environment variables from the dependend repos --> |
| 61 <action type="set_environment_for_install"> | 61 <action type="set_environment_for_install"> |
| 62 <repository changeset_revision="f3f4b6121444" name="package_pysam_0_7_5" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 62 <repository changeset_revision="f3f4b6121444" name="package_pysam_0_7_5" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 63 <package name="pysam" version="0.7.5" /> | 63 <package name="pysam" version="0.7.5" /> |
| 64 </repository> | 64 </repository> |
| 65 </action> | 65 </action> |
| 66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> | 66 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> |
| 67 <action type="shell_command">git reset --hard 91b873c095bb4ca44da99e57d8b49784508aa98b</action> | 67 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action> |
| 68 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 68 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 69 <action type="shell_command"> | 69 <action type="shell_command"> |
| 70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 70 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | 71 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
| 72 </action> | 72 </action> |