Mercurial > repos > bgruening > deeptools
comparison deepTools_macros.xml @ 11:baf4283e2d7f draft
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 14 Dec 2013 07:00:55 -0500 |
| parents | 135f3bae5c56 |
| children | aea72b24dea0 |
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| 10:135f3bae5c56 | 11:baf4283e2d7f |
|---|---|
| 170 <option value="no" selected="true">no</option> | 170 <option value="no" selected="true">no</option> |
| 171 <option value="yes">yes</option> | 171 <option value="yes">yes</option> |
| 172 </param> | 172 </param> |
| 173 <when value="no" /> | 173 <when value="no" /> |
| 174 <when value="yes"> | 174 <when value="yes"> |
| 175 <param name="outFileFormat" type="select" label="Image file format"> | 175 <yield /> |
| 176 <option value="png" selected="true">png</option> | |
| 177 <option value="pdf">pdf</option> | |
| 178 <option value="svg">svg</option> | |
| 179 <option value="eps">eps</option> | |
| 180 <option value="emf">emf</option> | |
| 181 </param> | |
| 182 <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/> | 176 <param name="saveData" type="boolean" label="Save the data underlying data for the average profile"/> |
| 183 <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/> | 177 <param name="saveMatrix" type="boolean" label="Save the the matrix of values underlying the heatmap"/> |
| 184 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> | 178 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> |
| 185 </when> | 179 </when> |
| 186 </conditional> | 180 </conditional> |
| 187 </macro> | 181 </macro> |
| 188 | 182 |
| 189 <macro name="output_graphic_outputs"> | 183 <macro name="input_image_file_format"> |
| 184 <param name="outFileFormat" type="select" label="Image file format"> | |
| 185 <option value="png" selected="true">png</option> | |
| 186 <option value="pdf">pdf</option> | |
| 187 <option value="svg">svg</option> | |
| 188 <option value="eps">eps</option> | |
| 189 <option value="emf">emf</option> | |
| 190 </param> | |
| 191 </macro> | |
| 192 | |
| 193 <macro name="output_image_file_format"> | |
| 190 <data format="png" name="outFileName" label="${tool.name} image"> | 194 <data format="png" name="outFileName" label="${tool.name} image"> |
| 191 <change_format> | 195 <change_format> |
| 192 <when input="output.outFileFormat" value="pdf" format="pdf" /> | 196 <when input="output.outFileFormat" value="pdf" format="pdf" /> |
| 193 <when input="output.outFileFormat" value="svg" format="svg" /> | 197 <when input="output.outFileFormat" value="svg" format="svg" /> |
| 194 <when input="output.outFileFormat" value="eps" format="eps" /> | 198 <when input="output.outFileFormat" value="eps" format="eps" /> |
| 195 <when input="output.outFileFormat" value="emf" format="emf" /> | 199 <when input="output.outFileFormat" value="emf" format="emf" /> |
| 196 </change_format> | 200 </change_format> |
| 197 </data> | 201 </data> |
| 202 </macro> | |
| 203 | |
| 204 <macro name="output_graphic_outputs"> | |
| 205 <yield /> | |
| 198 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column"> | 206 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column"> |
| 199 <filter> | 207 <filter> |
| 200 (( | 208 (( |
| 201 output['showOutputSettings'] == 'yes' and | 209 output['showOutputSettings'] == 'yes' and |
| 202 output['saveData'] is True | 210 output['saveData'] is True |