Mercurial > repos > bgruening > deeptools

comparison correctGCBias.xml @ 5:c54d31467be4 draft

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Uploaded
author bgruening
date Fri, 29 Nov 2013 08:59:04 -0500
parents d957e25e18a3
children c53a73b8eef9
comparison
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4:ac935c35437a 5:c54d31467be4
14 #silent os.system("ln -s %s %s" % (str($bamInput), $temp_bam_path)) 14 #silent os.system("ln -s %s %s" % (str($bamInput), $temp_bam_path))
15 #silent os.system("ln -s %s %s.bai" % (str($bamInput.metadata.bam_index), $temp_bam_path)) 15 #silent os.system("ln -s %s %s.bai" % (str($bamInput.metadata.bam_index), $temp_bam_path))
16 16
17 17
18 correctGCBias 18 correctGCBias
19
20 @THREADS@
21
19 --bamfile '$temp_bam_path' 22 --bamfile '$temp_bam_path'
20 --GCbiasFrequenciesFile $GCbiasFrequenciesFile 23 --GCbiasFrequenciesFile $GCbiasFrequenciesFile
21 24
22 @reference_genome_source@ 25 @reference_genome_source@
23 26