diff tool_dependencies.xml @ 13:b4c5dd45778a draft

Uploaded

--- a/tool_dependencies.xml	Sat Dec 14 08:58:41 2013 -0500
+++ b/tool_dependencies.xml	Mon Dec 16 04:36:19 2013 -0500
@@ -57,7 +57,7 @@
          <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
      </package>
 
-    <package name="deepTools" version="1.5.4_6765c227d9628f8e6ba690e6fde7f1d86c497b49">
+    <package name="deepTools" version="1.5.4_74aac0843a956ca352e3e85087f20c8f158e2f7d">
         <install version="1.0">
             <actions>
                 <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
@@ -69,8 +69,17 @@
                     <repository changeset_revision="f938170835cc" name="package_bx_python_12_2013" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
                         <package name="bx-python" version="12-2013" />
                     </repository>
+                    <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.7.1" />
+                    </repository>
+                    <repository changeset_revision="dceff6072512" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="matplotlib" version="1.2.1" />
+                    </repository>
+                    <repository changeset_revision="984d208b0808" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.12.0" />
+                    </repository>
                 </action>
-                <action type="shell_command">git reset --hard 6765c227d9628f8e6ba690e6fde7f1d86c497b49</action>
+                <action type="shell_command">git reset --hard 74aac0843a956ca352e3e85087f20c8f158e2f7d</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">
                     export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;