# HG changeset patch
# User bgruening
# Date 1385988546 18000
# Node ID 1ee0b1ecf50096b08d0bb429c47762c2671f32da
# Parent  c54d31467be4a4e6ac7a3d3aebb30c1043e2f96f
Uploaded

diff -r c54d31467be4 -r 1ee0b1ecf500 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 29 08:59:04 2013 -0500
+++ b/tool_dependencies.xml	Mon Dec 02 07:49:06 2013 -0500
@@ -57,20 +57,19 @@
     <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a">
         <install version="1.0">
             <actions>
+                <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
                     <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
                         <package name="pysam" version="0.7.7" />
                     </repository>
                 </action>
-                <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action>
                 <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action>
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
                 <action type="shell_command">
                     export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                     python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                 </action>
-
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>