comparison deepTools_macros.xml @ 3:11f1d6fcf2c2 draft

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb

2:ea8efdcf151f

<macros>

    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
    <token name="@WRAPPER_VERSION@">3.0.2</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="3.0.2">deeptools</requirement>
            <requirement type="package" version="1.7">samtools</requirement>
        </requirements>
        <expand macro="stdio" />
        <version_command>@BINARY@ --version</version_command>
    </xml>

                 regions as having a value of zero. The decision to
                 skip non-covered regions depends on the interpretation
                 of the data. Non-covered regions may represent, for
                 example, repetitive regions that should be ignored.
                 (default: False)" />
    </xml>

    <xml name="input_save_matrix_values">
        <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
    </xml>

3:11f1d6fcf2c2

<macros>

    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
    <token name="@WRAPPER_VERSION@">3.1.0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="3.1.0">deeptools</requirement>
            <requirement type="package" version="1.7">samtools</requirement>
        </requirements>
        <expand macro="stdio" />
        <version_command>@BINARY@ --version</version_command>
    </xml>

                 regions as having a value of zero. The decision to
                 skip non-covered regions depends on the interpretation
                 of the data. Non-covered regions may represent, for
                 example, repetitive regions that should be ignored.
                 (default: False)" />
    </xml>

    <xml name="exactScaling">
        <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
            label="Compute an exact scaling factor"
            help="Compute an exact scaling factor rather than one based on
                  sampled reads. This is only useful in cases where you are
                  filtering some alignments out AND this are both rare and
                  tend to clump together in the genome. In such cases the
                  region-based sampling employed by deepTools would produce
                  inaccurate scaling factors. Note that this option results
                  in the process taking significantly more time to complete." />
    </xml>

    <xml name="input_save_matrix_values">
        <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
    </xml>