comparison bamCompare.xml @ 24:5f6d123679f4 draft

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57

23:c09c23eaf116

            <when value="yes">
                <expand macro="smoothLength" />
                <expand macro="read_processing_options" />

                <expand macro="skipNAs" />
                <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
                    help="Skip bins where BOTH files lack coverage.">
                    <option value="" selected="true">No</option>
                    <option value="--skipZeroOverZero">Yes, skip them.</option>
                </param>

                <param argument="--ignoreForNormalization" type="text" value="" size="50"
                    label="regions that should be excluded for calculating the scaling factor"
                    help="Sometimes it makes sense to exclude certain regions when calculating the scaling factor.
                        For example, if you know of copy number variations between samples then you may want to exclude these.

24:5f6d123679f4

            <when value="yes">
                <expand macro="smoothLength" />
                <expand macro="read_processing_options" />

                <expand macro="skipNAs" />
                <expand macro="skipZeroOverZero" />

                <param argument="--ignoreForNormalization" type="text" value="" size="50"
                    label="regions that should be excluded for calculating the scaling factor"
                    help="Sometimes it makes sense to exclude certain regions when calculating the scaling factor.
                        For example, if you know of copy number variations between samples then you may want to exclude these.