Mercurial > repos > bgruening > deeptools_bam_compare
comparison bamCompare.xml @ 24:5f6d123679f4 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
author | bgruening |
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date | Tue, 02 Apr 2019 08:16:32 -0400 |
parents | c09c23eaf116 |
children | 29451af70c52 |
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23:c09c23eaf116 | 24:5f6d123679f4 |
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162 <when value="yes"> | 162 <when value="yes"> |
163 <expand macro="smoothLength" /> | 163 <expand macro="smoothLength" /> |
164 <expand macro="read_processing_options" /> | 164 <expand macro="read_processing_options" /> |
165 | 165 |
166 <expand macro="skipNAs" /> | 166 <expand macro="skipNAs" /> |
167 <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" | 167 <expand macro="skipZeroOverZero" /> |
168 help="Skip bins where BOTH files lack coverage."> | |
169 <option value="" selected="true">No</option> | |
170 <option value="--skipZeroOverZero">Yes, skip them.</option> | |
171 </param> | |
172 | 168 |
173 <param argument="--ignoreForNormalization" type="text" value="" size="50" | 169 <param argument="--ignoreForNormalization" type="text" value="" size="50" |
174 label="regions that should be excluded for calculating the scaling factor" | 170 label="regions that should be excluded for calculating the scaling factor" |
175 help="Sometimes it makes sense to exclude certain regions when calculating the scaling factor. | 171 help="Sometimes it makes sense to exclude certain regions when calculating the scaling factor. |
176 For example, if you know of copy number variations between samples then you may want to exclude these. | 172 For example, if you know of copy number variations between samples then you may want to exclude these. |