Mercurial > repos > bgruening > deeptools_bam_compare
comparison bamCompare.xml @ 20:a0ad8afc1e5f draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb
| author | bgruening |
|---|---|
| date | Mon, 09 Jul 2018 18:48:13 -0400 |
| parents | 2a1b4e95bdf7 |
| children | 59cbb059cd1e |
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| 19:439e75416e1a | 20:a0ad8afc1e5f |
|---|---|
| 44 --normalizeUsing $scaling.type | 44 --normalizeUsing $scaling.type |
| 45 #end if | 45 #end if |
| 46 #end if | 46 #end if |
| 47 | 47 |
| 48 --operation $comparison.type | 48 --operation $comparison.type |
| 49 $exactScaling | |
| 49 | 50 |
| 50 #if $comparison.type in ['ratio','log2']: | 51 #if $comparison.type in ['ratio','log2']: |
| 51 --pseudocount $comparison.pseudocount | 52 --pseudocount $comparison.pseudocount |
| 52 #end if | 53 #end if |
| 53 | 54 |
| 143 <when value="reciprocal_ratio"> | 144 <when value="reciprocal_ratio"> |
| 144 <expand macro="pseudocount" /> | 145 <expand macro="pseudocount" /> |
| 145 </when> | 146 </when> |
| 146 </conditional> | 147 </conditional> |
| 147 | 148 |
| 149 <expand macro="exactScaling" /> | |
| 148 <param name="outFileFormat" type="select" label="Coverage file format"> | 150 <param name="outFileFormat" type="select" label="Coverage file format"> |
| 149 <option value="bigwig" selected="true">bigwig</option> | 151 <option value="bigwig" selected="true">bigwig</option> |
| 150 <option value="bedgraph">bedgraph</option> | 152 <option value="bedgraph">bedgraph</option> |
| 151 </param> | 153 </param> |
| 152 <expand macro="region_limit_operation" /> | 154 <expand macro="region_limit_operation" /> |