Mercurial > repos > bgruening > deeptools_bam_compare

diff bamCompare.xml @ 22:59cbb059cd1e draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6507b14607984c6f48d9866922a17132de4bb54d
author bgruening
date Tue, 19 Feb 2019 10:03:16 -0500
parents a0ad8afc1e5f
children c09c23eaf116
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line diff
--- a/bamCompare.xml	Wed Aug 22 17:14:20 2018 -0400
+++ b/bamCompare.xml	Tue Feb 19 10:03:16 2019 -0500
@@ -63,6 +63,7 @@
 
                 @ADVANCED_OPTS_READ_PROCESSING@
                 $advancedOpt.skipNAs
+                $advancedOpt.skipZeroOverZero
 
                 #if str($advancedOpt.ignoreForNormalization).strip() != '':
                     --ignoreForNormalization '$advancedOpt.ignoreForNormalization'
@@ -163,6 +164,11 @@
                 <expand macro="read_processing_options" />
 
                 <expand macro="skipNAs" />
+                <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
+                    help="Skip bins where BOTH files lack coverage.">
+                    <option value="no" selected="true">No</option>
+                    <option value="yes">Yes, skip them.</option>
+                </param>
 
                 <param argument="--ignoreForNormalization" type="text" value="" size="50"
                     label="regions that should be excluded for calculating the scaling factor"