Mercurial > repos > bgruening > deeptools_bam_coverage
comparison deepTools_macros.xml @ 3:10e697ec9bfb draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c
| author | bgruening |
|---|---|
| date | Wed, 09 Mar 2016 18:06:40 -0500 |
| parents | 36f655a04a57 |
| children | 5c5c6aff3732 |
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| 2:8145727ba0f0 | 3:10e697ec9bfb |
|---|---|
| 70 label="Region of the genome to limit the operation to" | 70 label="Region of the genome to limit the operation to" |
| 71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." /> | 71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." /> |
| 72 </xml> | 72 </xml> |
| 73 | 73 |
| 74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> | 74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
| 75 <token name="@WRAPPER_VERSION@">2.1.0</token> | 75 <token name="@WRAPPER_VERSION@">2.2.2</token> |
| 76 <xml name="requirements"> | 76 <xml name="requirements"> |
| 77 <requirements> | 77 <requirements> |
| 78 <requirement type="package" version="2.7.10">python</requirement> | 78 <requirement type="package" version="2.7.10">python</requirement> |
| 79 <requirement type="binary">@BINARY@</requirement> | 79 <requirement type="binary">@BINARY@</requirement> |
| 80 <requirement type="package" version="2.1.0">deepTools</requirement> | 80 <requirement type="package" version="2.2.2">deepTools</requirement> |
| 81 <yield /> | 81 <yield /> |
| 82 </requirements> | 82 </requirements> |
| 83 <expand macro="stdio" /> | 83 <expand macro="stdio" /> |
| 84 <version_command>@BINARY@ --version</version_command> | 84 <version_command>@BINARY@ --version</version_command> |
| 85 </xml> | 85 </xml> |
| 308 </xml> | 308 </xml> |
| 309 | 309 |
| 310 <xml name="multiple_input_bams"> | 310 <xml name="multiple_input_bams"> |
| 311 <param argument="--bamfiles" type="data" format="bam" min="1" | 311 <param argument="--bamfiles" type="data" format="bam" min="1" |
| 312 label="Bam file" multiple="true" | 312 label="Bam file" multiple="true" |
| 313 help="The BAM file must be sorted."/> | 313 help=""/> |
| 314 </xml> | 314 </xml> |
| 315 | 315 |
| 316 <xml name="multiple_input_bams_min2"> | 316 <xml name="multiple_input_bams_min2"> |
| 317 <param argument="--bamfiles" type="data" format="bam" min="2" | 317 <param argument="--bamfiles" type="data" format="bam" min="2" |
| 318 label="Bam file" multiple="true" | 318 label="Bam file" multiple="true" |
| 319 help="The BAM file must be sorted."/> | 319 help=""/> |
| 320 </xml> | 320 </xml> |
| 321 | 321 |
| 322 <xml name="multiple_input_bigwigs"> | 322 <xml name="multiple_input_bigwigs"> |
| 323 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2" | 323 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2" |
| 324 label="Bigwig file" | 324 label="Bigwig file" |