Mercurial > repos > bgruening > deeptools_bam_coverage
comparison deepTools_macros.xml @ 6:115aa2cbf152 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 43d23f495200449aec91a41fd537603014aa93ba-dirty
| author | bgruening |
|---|---|
| date | Sun, 24 Apr 2016 16:28:16 -0400 |
| parents | 5c5c6aff3732 |
| children | 65e0795278b4 |
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| 5:5c5c6aff3732 | 6:115aa2cbf152 |
|---|---|
| 66 </xml> | 66 </xml> |
| 67 | 67 |
| 68 <xml name="region_limit_operation"> | 68 <xml name="region_limit_operation"> |
| 69 <param argument="--region" type="text" value="" | 69 <param argument="--region" type="text" value="" |
| 70 label="Region of the genome to limit the operation to" | 70 label="Region of the genome to limit the operation to" |
| 71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." /> | 71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"."> |
| 72 <sanitizer> | |
| 73 <valid initial="string.letters,string.digits"> | |
| 74 <add value="|"/> | |
| 75 </valid> | |
| 76 </sanitizer> | |
| 77 </param> | |
| 72 </xml> | 78 </xml> |
| 73 | 79 |
| 74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> | 80 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
| 75 <token name="@WRAPPER_VERSION@">2.2.2</token> | 81 <token name="@WRAPPER_VERSION@">2.2.3</token> |
| 76 <xml name="requirements"> | 82 <xml name="requirements"> |
| 77 <requirements> | 83 <requirements> |
| 78 <requirement type="package" version="2.7.10">python</requirement> | 84 <requirement type="package" version="2.7.10">python</requirement> |
| 79 <requirement type="binary">@BINARY@</requirement> | 85 <requirement type="binary">@BINARY@</requirement> |
| 80 <requirement type="package" version="2.2.2">deepTools</requirement> | 86 <requirement type="package" version="2.2.3">deepTools</requirement> |
| 81 <yield /> | 87 <yield /> |
| 82 </requirements> | 88 </requirements> |
| 83 <expand macro="stdio" /> | 89 <expand macro="stdio" /> |
| 84 <version_command>@BINARY@ --version</version_command> | 90 <version_command>@BINARY@ --version</version_command> |
| 85 </xml> | 91 </xml> |
| 300 .. _help site: https://deeptools.readthedocs.org/ | 306 .. _help site: https://deeptools.readthedocs.org/ |
| 301 | 307 |
| 302 </token> | 308 </token> |
| 303 <xml name="citations"> | 309 <xml name="citations"> |
| 304 <citations> | 310 <citations> |
| 305 <citation type="doi">10.1093/nar/gku365</citation> | 311 <citation type="doi">10.1093/nar/gkw257</citation> |
| 306 <yield /> | 312 <yield /> |
| 307 </citations> | 313 </citations> |
| 308 </xml> | 314 </xml> |
| 309 | 315 |
| 310 <xml name="multiple_input_bams"> | 316 <xml name="multiple_input_bams"> |