Mercurial > repos > bgruening > deeptools_bam_coverage
comparison deepTools_macros.xml @ 5:5c5c6aff3732 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 4b6c1004addf9496c85fb8566173e4f9f9e9d356
| author | bgruening |
|---|---|
| date | Fri, 18 Mar 2016 08:47:18 -0400 |
| parents | 10e697ec9bfb |
| children | 115aa2cbf152 |
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| 4:6812b926019c | 5:5c5c6aff3732 |
|---|---|
| 338 #set labels=[] | 338 #set labels=[] |
| 339 #for $counter, $bamfile in enumerate($bamfiles): | 339 #for $counter, $bamfile in enumerate($bamfiles): |
| 340 ln -s "${bamfile}" "./${counter}.bam" && | 340 ln -s "${bamfile}" "./${counter}.bam" && |
| 341 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" && | 341 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" && |
| 342 #silent $files.append('%s.bam' % $counter) | 342 #silent $files.append('%s.bam' % $counter) |
| 343 #silent $labels.append('%s' % ($bamfile.display_name)) | 343 #silent $labels.append("'%s'" % ($bamfile.display_name)) |
| 344 #end for | 344 #end for |
| 345 ]]> | 345 ]]> |
| 346 </token> | 346 </token> |
| 347 | 347 |
| 348 <token name="@multiple_input_bigwigs@"> | 348 <token name="@multiple_input_bigwigs@"> |
| 350 #set files=[] | 350 #set files=[] |
| 351 #set labels=[] | 351 #set labels=[] |
| 352 #for $counter, $bigwig in enumerate($bigwigfiles): | 352 #for $counter, $bigwig in enumerate($bigwigfiles): |
| 353 ln -s "${bigwig}" "${counter}.bw" && | 353 ln -s "${bigwig}" "${counter}.bw" && |
| 354 #silent $files.append('%s.bw' % $counter) | 354 #silent $files.append('%s.bw' % $counter) |
| 355 #silent $labels.append('%s' % ($bigwig.display_name)) | 355 #silent $labels.append("'%s'" % ($bigwig.display_name)) |
| 356 #end for | 356 #end for |
| 357 ]]> | 357 ]]> |
| 358 </token> | 358 </token> |
| 359 | 359 |
| 360 <xml name="reference_genome_source"> | 360 <xml name="reference_genome_source"> |