Mercurial > repos > bgruening > deeptools_bam_coverage
comparison bamCoverage.xml @ 20:827fe3df85c3 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb
| author | bgruening |
|---|---|
| date | Mon, 09 Jul 2018 19:06:38 -0400 |
| parents | f024daeffbed |
| children | 2d2cf5c1ea8a |
comparison
equal
deleted
inserted
replaced
| 19:3033c3fba046 | 20:827fe3df85c3 |
|---|---|
| 39 #end if | 39 #end if |
| 40 | 40 |
| 41 #if str($region).strip() != '': | 41 #if str($region).strip() != '': |
| 42 --region '$region' | 42 --region '$region' |
| 43 #end if | 43 #end if |
| 44 $exactScaling | |
| 44 | 45 |
| 45 #if $advancedOpt.showAdvancedOpt == "yes": | 46 #if $advancedOpt.showAdvancedOpt == "yes": |
| 46 #if str($advancedOpt.scaleFactor).strip() != '': | 47 #if str($advancedOpt.scaleFactor).strip() != '': |
| 47 --scaleFactor $advancedOpt.scaleFactor | 48 --scaleFactor $advancedOpt.scaleFactor |
| 48 #end if | 49 #end if |
| 99 <param name="outFileFormat" type="select" label="Coverage file format"> | 100 <param name="outFileFormat" type="select" label="Coverage file format"> |
| 100 <option value="bigwig" selected="true">bigwig</option> | 101 <option value="bigwig" selected="true">bigwig</option> |
| 101 <option value="bedgraph">bedgraph</option> | 102 <option value="bedgraph">bedgraph</option> |
| 102 </param> | 103 </param> |
| 103 | 104 |
| 105 <expand macro="exactScaling" /> | |
| 104 <expand macro="region_limit_operation" /> | 106 <expand macro="region_limit_operation" /> |
| 105 | 107 |
| 106 <conditional name="advancedOpt"> | 108 <conditional name="advancedOpt"> |
| 107 <param name="showAdvancedOpt" type="select" label="Show advanced options" > | 109 <param name="showAdvancedOpt" type="select" label="Show advanced options" > |
| 108 <option value="no" selected="true">no</option> | 110 <option value="no" selected="true">no</option> |